Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Intestinal absorption and brain permeation constitute key parameters of toxicokinetics for pesticides, conditioning their toxicity, including neurotoxicity. However, they remain poorly characterized in humans. The present study was therefore designed to evaluate human intestine and brain permeation for a large set of pesticides (n = 338) belonging to various chemical classes, using an in silico graphical BOILED-Egg/SwissADME online method based on lipophilicity and polarity that was initially developed for drugs. A high percentage of the pesticides (81.4%) was predicted to exhibit high intestinal absorption, with a high accuracy (96%), whereas a lower, but substantial, percentage (38.5%) displayed brain permeation. Among the pesticide classes, organochlorines (n = 30) constitute the class with the lowest percentage of intestine-permeant members (40%), whereas that of the organophosphorus compounds (n = 99) has the lowest percentage of brain-permeant chemicals (9%). The predictions of the permeations for the pesticides were additionally shown to be significantly associated with various molecular descriptors well-known to discriminate between permeant and non-permeant drugs. Overall, our in silico data suggest that human exposure to pesticides through the oral way is likely to result in an intake of these dietary contaminants for most of them and brain permeation for some of them, thus supporting the idea that they have toxic effects on human health, including neurotoxic effects.
ISSN: 1660-4601

hal-01560242
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01560242
PUBMED : 28665355
DOI : 10.3390/ijerph14070708

Éditeur(s) : HAL CCSD De Gruyter
Résumé : A method for measuring shrinkage resulting from drying in the three anisotropic directions is developed and tested. Measurements are performed on sawn discs, a technique which simplifies preparation and enables large numbers of measurements. Shrinkage values can be represented as a map of the disc surface; the results indicate that comparisons between shrinkage distribution and tension wood distribution on the discs show a clear relationship and can be measured with relatively high accuracy in reference to the "shrinkage map". In the long term, this method could be useful in the timber industry as a means for choosing the direction in which logs are cut depending on their type of wood composition.
ISSN: 0018-3830

hal-00004531
https://hal.archives-ouvertes.fr/hal-00004531
https://hal.archives-ouvertes.fr/hal-00004531/document
https://hal.archives-ouvertes.fr/hal-00004531/file/Holzforschung2003_Clair-Jaouen-Beauchene-Fournier_ccsd.pdf

Éditeur(s) : HAL CCSD
Résumé : International audience
Two opposing visions of the Aegean backarc tectonics implicitly contain contrasting images of the rheological behaviour of the lihosphere, supported by different sets of observations. The propagation of the NAF and extension in the Corinth Rift suggest a strongly localising rheology whereas the formation of MCC in the Cyclades and the Rhodope suggests instead a more viscous behaviour. This paradox was the seminal question addressed by the ANR-EGEO programme (2007-2010) that leads to the following conclusions: (1) The exhumation of the Cycladic MCC's is accommodated by the N-dipping North Cycladic Detachment System (NCDS) that partly reworks the Vardar suture and at the base by a series of thrusts, including the basal contact of the Cycladic Blueschists (CBS) over the Cycladic Basement (CB). The activity of LANF is due to the reactivation of pre-existing discontinuities such as thrusts or earlier detachments and much less to the interaction with granitic plutons. (2) Exhumation in the Cyclades has proceeded in two stages: (a) Eocene syn-orogenic exhumation within the subduction lower/upperplate interface while the post-orogenic Rhodope MCC formed further north, (b) Oligo-Miocene post-orogenic extension in an MCC mode coeval with syn-orogenic exhumation in Crete and the Peloponnese. (3) Both stages were associated with slab retreat, as early as the Eocene with an acceleration at 30-35 Ma. (4) The localisation of the presently active steeply-dipping normal faults on the southern margin of the Corinth Rift may have been preceded by a partial reworking of thrusts and syn-orogenic detachments by shallow-dipping decollements. (5) The localisation of the NAF in the Marmara Sea region and the Northern Aegean Sea is now accurately dated between 5.3 and 5 Ma Ma using the erosion and deposition surfaces that mark the Messinian salinity Crisis and nannofossils ages. (6) The formation of MCCs in the Cyclades resulted in the draining of the low viscosity lower crust from the northern Aegean Sea and led to an easier coupling between upper mantle and upper crust, easing the localisation and propagation of the NAF. (7) A comparison between crustal and mantle finite strain suggests that mantle flow due to slab retreat controls the stretching of the crust. Our model involves progressive slab retreat and mantle flow below the overriding plate inducing the observed succession of tectonic episodes with a progressive localisation of extension due to several slab tearing events. There is no paradox in the tectonic history and rheological behaviour of the Aegean lithosphere but an evolution of the kinematic boundary conditions due to slab deformation at depth.
American Geophysical Union
San Francisco, United States

insu-00860518
https://hal-insu.archives-ouvertes.fr/insu-00860518
BIBCODE : 2010AGUFM.T13G..04J

Éditeur(s) : HAL CCSD
Résumé : International audience
Abstract A careful re-examination of the well-known written documents pertaining to the 2,750-year-long historical period of Mount Etna was carried out and their interpretation checked through the high-accuracy archeomagnetic method (>1,200 large samples), combined with the 226Ra-230Th radiochronology. The magnetic dating is based upon secular variation of the direction of the geomagnetic field (DGF) and estimated to reach a precision of  ±40 years for the last 1,200 years, and ±100 to 200 years up to circa 150 B.C. Although less precise, the 226Ra-230Th method provides a unique tool for distinguishing between historic and prehistoric lavas, which in some cases might have similar DGFs. We show that despite the abundance of details on ancient historical eruptions, the primary sources of information are often too imprecise to identify their lava flows and eruptive systems. Most of the ages of these lavas, which are today accepted on the geological maps and catalogues, were attributed in the 1800s on the basis of their morphology and without any stratigraphical control. In fact, we found that 80% of the “historically dated” flows and cones prior to the 1700s are usually several hundreds of years older than recorded, the discrepancies sometimes exceeding a millennium. This is proper the case for volcanics presumed of the “1651 east” (actually ∼1020), “1595” (actually two distinct flows, respectively, ∼1200 and ∼1060), “1566” (∼1180), “1536” (two branches dated ∼1250 and ∼950), “1444” (a branch dated ∼1270), “1408” (lower branches dated ∼450 and ∼350), “1381” (∼1160), “1329” (∼1030), “1284” (∼1450 and ∼700), “1169 or 812” (∼1000) eruptions. Conversely, well-preserved cones and flows that are undated on the maps were produced by recent eruptions that went unnoticed in historical accounts, especially during the Middle Ages. For the few eruptions that are recorded between A.D. 252 and 750 B.C., none of their presumed lava flows shows a DGF in agreement with that existing at their respective dates of occurrence, most of these flows being in fact prehistoric. The cinder cones of Monpeloso (presumed “A.D. 252”) and Mt. Gorna (“394 B.C.”), although roughly consistent magnetically and radiochronologically with their respective epochs, remain of unspecified age because of a lack of precision of the DGF reference curve at the time. It is concluded that at the time scale of the last millennia, Mount Etna does not provide evidence of a steady-state behavior. Periods of voluminous eruptions lasting 50 to 150 years (e.g., A.D. 300–450, 950–1060, 1607–1669) are followed by centuries of less productive activity, although at any time a violent outburst may occur. Such a revised history should be taken into account for eruptive models, magma output, internal plumbing of the volcano, petrological evolution, volcano mapping and civil protection.
Bulletin of Volcanology / Bull Volcanic Eruptions

hal-00315967
https://hal.archives-ouvertes.fr/hal-00315967
DOI : 10.1007/s00445-007-0121-x

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
How reliable are shear wave splitting measurements as a means of determining mantle flow direction? This remains a topic of debate, especially in the context of subduction. The answer hinges on whether our current understanding of mineral physics provides enough to accurately translate between seismic observations and mantle deformation. Here, we present an integrated model to simulate strain-history-dependent texture development and estimate resulting shear wave splitting in subduction environments. We do this for a mantle flow model that, in its geometry, approximates the double-sided Molucca Sea subduction system in Eastern Indonesia. We test a single-sided and a double-sided subduction case. Results are compared to recent splitting measurements of this region by Di Leo et al. (2012a). The setting lends itself as a case study, because it is fairly young and, therefore, early textures from the slab's descent from the near surface to the bottom of the mantle transition zone--which we simulate in our models--have not yet been overprinted by subsequent continuous steady state flow. Second, it allows us to test the significance of the double-sided geometry, i.e., the need for a rear barrier to achieve trench-parallel subslab mantle flow. We demonstrate that although a barrier amplifies trench-parallel subslab anisotropy due to mantle flow, it is not necessary to produce trench-parallel fast directions per se. In a simple model of A-type olivine lattice-preferred orientation and one-sided subduction, trench-parallel fast directions are produced by a combination of simple shear and extension through compression and pure shear in the subslab mantle.
ISSN: 1525-2027

hal-01053506
https://hal.archives-ouvertes.fr/hal-01053506
DOI : 10.1002/2013GC005032

Éditeur(s) : HAL CCSD Trans Tech Publications Inc.
Résumé : Two, high purity, Al-0.1 and 0.3wt%Mn alloys have been cold deformed in plane strain compression to strains of order 1.8 and the kinetics of subsequent recovery by sub-grain coarsening during annealing at 150-300°C measured by high resolution FEG-SEM EBSD. Accurate sub-grain size and misorientation distributions and their evolution with time and temperature have been determined. The average growth rates are then used to estimate the sub-grain boundary mobilities. Growth is analyzed by two well-known growth laws for the average sub-grain size δ (t): i) the standard relation for grain growth: where the exponent n takes values of 2-8 and ii) the relation proposed by Nes for dislocation climb in sub-grain walls: It is shown that the latter relation gives a better fit with the data in terms of the time and temperature dependence of the sub-grain sizes. In particular the activation energies for the logarithmic law are much closer to the values expected for solute-controlled movement of sub-boundaries.
Materials Science Forum

hal-00795441
https://hal.archives-ouvertes.fr/hal-00795441
DOI : 10.4028/www.scientific.net/MSF.715-716.725

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé : International audience
Three-quarters of the oceanic crust formed at fast-spreading ridges is composed of plutonic rocks whose mineral assemblages, textures and compositions record the history of melt transport and crystallization between the mantle and the sea floor. Despite the importance of these rocks, sampling them in situ is extremely challenging owing to the overlying dykes and lavas. This means that models for understanding the formation of the lower crust are based largely on geophysical studies1 and ancient analogues (ophiolites)2, 3, 4, 5 that did not form at typical mid-ocean ridges. Here we describe cored intervals of primitive, modally layered gabbroic rocks from the lower plutonic crust formed at a fast-spreading ridge, sampled by the Integrated Ocean Drilling Program at the Hess Deep rift. Centimetre-scale, modally layered rocks, some of which have a strong layering-parallel foliation, confirm a long-held belief that such rocks are a key constituent of the lower oceanic crust formed at fast-spreading ridges3, 6. Geochemical analysis of these primitive lower plutonic rocks--in combination with previous geochemical data for shallow-level plutonic rocks, sheeted dykes and lavas--provides the most completely constrained estimate of the bulk composition of fast-spreading oceanic crust so far. Simple crystallization models using this bulk crustal composition as the parental melt accurately predict the bulk composition of both the lavas and the plutonic rocks. However, the recovered plutonic rocks show early crystallization of orthopyroxene, which is not predicted by current models of melt extraction from the mantle7 and mid-ocean-ridge basalt differentiation8, 9. The simplest explanation of this observation is that compositionally diverse melts are extracted from the mantle and partly crystallize before mixing to produce the more homogeneous magmas that erupt.
ISSN: 0028-0836

hal-00950085
https://hal.archives-ouvertes.fr/hal-00950085
DOI : 10.1038/nature12778

Éditeur(s) : HAL CCSD
Résumé : Poster
We deployed a temporary local seismic network in the North Tanzanian Divergence (NTD) for 6 months in 2007 (35 stations, SEISMOTANZ'07 experiment). The region is characterized by major changes in the magmatic/tectonic nature of the rift, at the place where the eastern branch of the East African Rift enters the Tanzanian craton. More than 200 earthquakes were accurately located south of Lake Manyara.
Iceland in the Central Northern Atlantic : hotspot, sea currents and climate change
Plouzané, France

hal-00482059
http://hal.univ-brest.fr/hal-00482059
http://hal.univ-brest.fr/hal-00482059/document
http://hal.univ-brest.fr/hal-00482059/file/poster_albaric.pdf

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Scientific interest in urban meteorology has increased because highly populated areas experience high vulnerability to pollution or heavy rain. However, compared to urban air quality or urban heat island (UHI) processes, the urban water vapour cycle is poorly understood because it has been investigated less due to the lack of upper-air measurements and the high sensitivity of surface measurements to local heterogeneities. In this paper, surface measurements of wind, temperature, pressure and humidity, as well as integrated water vapour (IWV) from GPS and MODIS and numerical simulations, have been used to investigate the urban cycle of water vapour in May and June 2004 during the VAPIC field experiment in the Paris area. The surface data show the typical characteristics of an urban area with the absence of water vapour sources and a UHI of about 6 °C at night. The urban IWV distribution differs completely, with an urban IWV excess on average between 1600 and 0600 UTC (with a maximum of about 1.5 kg m−2 at 0600 and 1700 UTC). No IWV difference between the urban and rural areas is found in the middle of the day. The numerical simulations reproduce accurately the urban IWV anomaly. Shallow surface wind convergence associated with the UHI during nighttime provides moisture from the rural areas. Urban areas are therefore under wind convergence for most of the time. The rural water vapour sources and the depth of the convergence control the amplitude of the urban IWV excess. At about 1200 UTC, entrainment at the top of the urban boundary layer is the key process that inhibits the urban IWV excess observed at night
ISSN: 0035-9009

hal-00406370
https://hal.archives-ouvertes.fr/hal-00406370
DOI : 10.1002/qj.446

Éditeur(s) : HAL CCSD MDPI
Résumé : International audience
Satellite precipitation products are a means of estimating rainfall, particularly in areas that are sparsely equipped with rain gauges. The Guiana Shield is a region vulnerable to high water episodes. Flood risk is enhanced by the concentration of population living along the main rivers. A good understanding of the regional hydro-climatic regime, as well as an accurate estimation of precipitation is therefore of great importance. Unfortunately, there are very few rain gauges available in the region. The objective of the study is then to compare satellite rainfall estimation products in order to complement the information available in situ and to perform a regional analysis of four operational precipitation estimates, by partitioning the whole area under study into a homogeneous hydro-climatic region. In this study, four satellite products have been tested, TRMM TMPA (Tropical Rainfall Measuring Mission Multisatellite Precipitation Analysis) V7 (Version 7) and RT (real time), CMORPH (Climate Prediction Center (CPC) MORPHing technique) and PERSIANN (Precipitation Estimation from Remotely-Sensed Information using Artificial Neural Network), for daily rain gauge data. Product performance is evaluated at daily and monthly scales based on various intensities and hydro-climatic regimes from 1 January 2001 to 30 December 2012 and using quantitative statistical criteria (coefficient correlation, bias, relative bias and root mean square error) and quantitative error metrics (probability of detection for rainy days and for no-rain days and the false alarm ratio). Over the entire study period, all products underestimate precipitation. The results obtained in terms of the hydro-climate show that for areas with intense convective precipitation, TMPA V7 shows a better performance than other products, especially in the estimation of extreme precipitation events. In regions along the Amazon, the use of PERSIANN is better. Finally, in the driest areas, TMPA V7 and PERSIANN show the same performance.
ISSN: 2072-4292

meteo-01304579
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304579
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304579/document
https://hal-meteofrance.archives-ouvertes.fr/meteo-01304579/file/remotesensing-07-15831.pdf
DOI : 10.3390/rs71215831

Éditeur(s) : HAL CCSD Wiley-Blackwell
Résumé :  
1. Despite considerable interest in the application of plant functional traits to questions of community assembly and ecosystem structure and function, there is no consensus on the appropriateness of sampling designs to obtain plot-level estimates in diverse plant communities. 2. We measured 10 plant functional traits describing leaf and stem morphology and ecophysiology for all trees in nine 1-ha plots in terra firme lowland tropical rain forests of French Guiana (N = 4709). 3.We calculated, by simulation, the mean and variance in trait values for each plot and each trait expected under seven sampling methods and a range of sampling intensities. Simulated sampling methods included a variety of spatial designs, as well as the application of existing data base values to all individuals of a given species. 4. For each trait in each plot, we defined a performance index for each sampling design as the proportion of resampling events that resulted in observed means within 5% of the true plot mean, and observed variance within 20%of the true plot variance. 5. The relative performance of sampling designs was consistent for estimations of means and variances. Data base use had consistently poor performance for most traits across all plots, whereas sampling one individual per species per plot resulted in relatively high performance. We found few differences among different spatial sampling strategies; however, for a given strategy, increased intensity of sampling resulted in markedly improved accuracy in estimates of trait mean and variance. 6. We also calculated the financial cost of each sampling design based on data from our 'every individual per plot' strategy and estimated the sampling and botanical effort required. The relative performance of designs was strongly positively correlated with relative financial cost, suggesting that sampling investment returns are relatively constant. 7. Our results suggest that trait sampling for many objectives in species-rich plant communities may require the considerable effort of sampling at least one individual of each species in each plot, and that investment in complete sampling, though great, may be worthwhile for at least some traits.
Functional Ecology

hal-01032175
https://hal.archives-ouvertes.fr/hal-01032175
DOI : 10.1111/j.1365-2435.2009.01600.x

Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : International audience
DNA sequencing technology is becoming more accessible to a variety of researchers as costs continue to decline. As researchers begin to sequence novel transcriptomes, most of these data sets lack a reference genome and will have to rely on de novo assemblers. Making comparisons across assemblies can be difficult: each program has its strengths and weaknesses, and no tool exists to comparatively evaluate these data sets. We developed software in R, called Sequence Comparative Analysis using Networks (SCAN), to perform statistical comparisons between distinct assemblies. SCAN uses a reference data set to identify the most accurate de novo assembly and the ``good'' transcripts in the user's data. We tested SCAN on three publicly available transcriptomes, each assembled using three assembly programs. Moreover, we sequenced the transcriptome of the oomycete Achlya hypogyna and compared de novo assemblies from Velvet, ABySS, and the CLC Genomics Workbench assembly algorithms. One thousand one hundred twenty-eight of the CLC transcripts were statistically similar to the reference, compared with 49 of the Velvet transcripts and 937 of the ABySS transcripts. SCAN's strength is providing statistical support for transcript assemblies in a biological context. However, SCAN is designed to compare distinct node sets in networks, therefore it can also easily be extended to perform statistical comparisons on any network graph regardless of what the nodes represent.
ISSN: 0737-4038

hal-01544800
https://hal.archives-ouvertes.fr/hal-01544800
DOI : 10.1093/molbev/mst087

Éditeur(s) : HAL CCSD
Résumé : The Lesser Antilles is an area of high volcanic and earthquake activity, characterized by a 1000 km convergence zone resulting from the Atlantic plate subduction under the Caribbean plate with a slow convergent motion (2 cm/year). With five years of available data, the CDSA data base presents a more homogeneous vision of Lesser Antilles arc seismicity and allows detecting low seismic activity zones, in the north near the Virgin Islands, and in the south between St-Lucia and Grenada. The accuracy improvements of location is used to better study the relationship between tectonic structures and seismicity, to better define the subduction slab geometry, and to analyse the spatial variations of the Gutenberg-Richter law b-value. Concerning the 21 november 2004 Les Saintes earthquake, EMS98 intensities in Les Saintes islands were evaluated from an individual request and hypocenter relocalisations of the Les Saintes earthquake and the biggest aftershock of 14 february 2005 were made using a method of master/slave in order to contrain the seismic source of the mainchock. As seismic hazard assessment depends from strong ground motion generated by earthquakes, the last part of this work concerns modeling accelerometric records of the Les Saintes earthquakes, combining a composite source model with an empirical Green Function technique. In our study, we used Les Saintes aftershocks as Empirical Green Function.
L'arc des Petites Antilles situé sur la bordure nord-est de la plaque Caraïbe, résulte d'un phénomène de subduction, les plaques américaines plongeant sous celle de la Caraïbe avec une vitesse de 2 cm/an. Les Antilles Françaises représentent la région française où le risque sismique est le plus important. Ce travail dont l'objectif est d'améliorer la connaissance de l'aléa sismique dans les Antilles Françaises, repose sur les données du Réseau Accélérométrique Permanent (RAP) et sur celles du « Centre de Données des Antilles Françaises ». L'analyse de ces données permet de mieux contraindre la sismicité de l'arc. Deux zones de très faible sismicité sont mises en évidence : au nord près des Iles Vierges et au sud entre Sainte-Lucie et Grenade. D'autres points sont aussi résolus : imagerie de la subduction le long de l'arc, relations entre la sismicité superficielle et la tectonique active, variations de la pente (b-value) de la loi de Gutenberg-Richter. Le séisme majeur du 21 novembre 2004 Mw=6.3 est au cœur des deux derniers chapitres. Plusieurs aspects y sont présentés : macrosismicité avec l'évaluation d'intensités EMS98 obtenues du dépouillement de formulaires individuels recueillis pour les Iles des Saintes, et relocalisation par la méthode de maître/esclave du choc principal et de sa plus forte réplique du 14 février 2005, de façon à mieux contraindre l'imagerie de la source du choc principal, étape primordiale pour la dernière partie portant sur la modélisation des signaux du choc principal des Saintes. Nous tentons dans cette dernière partie de modéliser les enregistrements de mouvements forts avec une approche semi-empirique en se basant sur un modèle stochastique large-bande et proposons l'utilisation de plusieurs Fonctions de Green Empiriques (FGE) sélectionnées parmi les répliques du séisme des Saintes.
https://tel.archives-ouvertes.fr/tel-00409021

tel-00409021
https://tel.archives-ouvertes.fr/tel-00409021
https://tel.archives-ouvertes.fr/tel-00409021/document
https://tel.archives-ouvertes.fr/tel-00409021/file/these_BengoubouMendy_2008.pdf

Éditeur(s) : HAL CCSD Oxford University Press
Résumé : International audience
Chronic rhinosinusitis (CRS) rank second at chronic inflammatory diseases in industrialized countries and are an important public health concern. Diagnosis relies on a set of arguments including clinical signs, imaging, histopathologic and mycological analyses of sinus specimens, collected during nasal endoscopy. The sensitivity of fungal cultures is reported to be poor, even when direct examination is positive, thus the epidemiology of fungal chronic sinusitis is ill-known. This study evaluated the sensitivity of molecular diagnosis in 70 consecutive samples (61 patients with CRS) analysed at the University Hospital of Rennes during a 3-year period. DNA detection was performed using a conventional PCR method targeting the ITS1/ITS2 sequence and the resulting amplification products were sequenced. Fungal CRS was proven in 42 patients (69%), of which only 20 (48%) had a positive culture. 37/42 (88%) patients were diagnosed with a fungus ball, 3 with allergic fungal CRS and 2 with undetermined fungal CRS. PCR was positive in all 42 cases and direct sequencing allowed to identify fungi in all cases but one, and detected multiple infection in 3. Aspergillus fumigatus was present in 69% of patients; Cladosporium cladosporoides in 9.5%, Scedosporium sp., A. nidulans and A. flavus in 7% each. In 2/19 patients with negative direct examination, sequencing analysis revealed the presence of Capnobotryella sp. and C. cladosporoides, in clinical settings compatible with fungal sinusitis. In conclusion, ITS1/ITS2 PCR had a twice better sensitivity than culture, and combined sequencing provides accurate epidemiological data on fungal CRS.
ISSN: 1369-3786

hal-01383632
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01383632
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01383632/document
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01383632/file/Contribution%20of%20molecular%20tools%20for%20the%20diagnosis.pdf
DOI : 10.1093/mmy/myw041

Éditeur(s) : HAL CCSD
Résumé : International audience
Wound healing is important for sharks from the earliest life stages, for example, as the 'umbilical scar' in viviparous species heals, and throughout adulthood, when sharks can incur a range of external injuries from natural and anthropogenic sources. Despite anecdotal accounts of rapid healing in elasmobranchs, data regarding recovery and survival of individuals from different wound or injury types has not been systematically collected. The present study documented: (i) 'umbilical scar' healing in wild-caught, neonatal blacktip reef sharks while being reared for 30 days in flow-through laboratory aquaria in French Polynesia; (ii) survival and recovery of free-swimming blacktip reef sharks in Australia and French Polynesia following a range of injuries; and (iii) long-term survival following suspected shark-finning activities. Laboratory monitoring, tag-recapture records, telemetry data and photo-identification records suggest that blacktip reef sharks have a high capacity to survive and recover from small or even large and severe wounds. Healing rates, recovery and survival are important factors to consider when assessing impacts of habitat degradation and fishing stress on shark populations. The present study suggests that individual survival may depend more on handling practices and physiological stress rather than the extent of physical injury. These observations also contribute to discussions regarding the ethics of tagging practices used in elasmobranch research and provide baseline healing rates that may increase the accuracy in estimating reproductive timing inferred from mating scars and birth dates for neonatal sharks based on umbilical scar healing status. Cite as: Chin A, Mourier J, Rummer JL (2015) Blacktip reef sharks (Carcharhinus melanopterus) show high capacity for wound healing and recovery following injury. Conserv Physiol 3: doi:10.1093/conphys/cov062.
Conservation physiology

Droits : http://creativecommons.org/licenses/by/
hal-01250745
https://hal-univ-perp.archives-ouvertes.fr/hal-01250745
https://hal-univ-perp.archives-ouvertes.fr/hal-01250745/document
https://hal-univ-perp.archives-ouvertes.fr/hal-01250745/file/Conserv%20Physiol-2015-Chin-.pdf
DOI : 10.1093/conphys/cov062

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
In Taiwan, about one third of the lithospheric plate convergence between Eurasia and the Philippine Sea plate is accommodated on the eastern coast across the narrow Longitudinal Valley (LV). The Longitudinal Valley Fault (LVF) is the main seismically active fault zone in this region. However, the spatial distribution of ground deformation due to interseismic loading on locked fault segments remains widely unknown. To address this problem, we use a "permanent scatterer" (PS) interferometric synthetic aperture radar (InSAR) approach for processing the ERS satellite archives. The PS mean velocity maps allow accurately mapping and quantifying the ground deformation all along the LV. Assuming that, close to the surface, the fault plane along the central LVF creeping segment dips 55 degrees to the east, we derive a slip vector at the surface of similar to 25 mm/yr with a mean rake of 70 degrees. In agreement with our PS observations, shallow seismicity indicates a clear change in the fault mechanical behavior of the creeping segment around Fuli town. Finally, we propose a combination of the PS velocity fields for estimating a 3-D map of ground deformation. In the southern part of the LV, the vertical component reveals an uplift of the Coastal Range with respect to the LV of similar to 10 mm/yr. Moreover, between Taitung and Luyeh, the vertical deformation is essentially accommodated along the Luyeh Strand. Finally, north of Rueisuei, the Coastal Range uniformly subsides at similar to 15 mm/yr relative to the western side of the LV. However, a local uplift pattern is detected around latitude 23 degrees 42'.
ISSN: 0148-0227

hal-00595532
https://hal.archives-ouvertes.fr/hal-00595532
DOI : 10.1029/2010JB007898

Éditeur(s) : HAL CCSD Wiley
Résumé :  
The accuracy of a ThetaProbe (Delta-T Devices Ltd, UK) to obtain repeated measures of soil water content in pot plants was tested. This alternative to balance determinations led to a large underestimation of water content, varying from 12.2 to 21.8% of the total water content, depending on soil type.
ISSN: 0266-0032

hal-01032191
https://hal.archives-ouvertes.fr/hal-01032191
DOI : 10.1111/j.1475-2743.2003.tb00285.x

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
Based on global earthquake catalogs, the hypocenters, nodal planes, and seismic moments of worldwide subduction plate interface earthquakes were extracted for the period between 1900 and 2007. Assuming that the seismogenic zone coincides with the distribution of 5.5 <= M < 7 earthquakes, the subduction interface seismogenic zones were mapped for 80% of the trench systems and characterized with geometrical and mechanical parameters. Using this database, correlations were isolated between significant parameters to identify cause-effect relationships. Empirical laws obtained in previous studies were revisited in light of this more complete, accurate, and uniform description of the subduction interface seismogenic zone. The seismogenic zone was usually found to end in a fore-arc mantle, rather than at a Moho depth. The subduction velocity was the first-order controlling parameter for variations in the physical characteristics of plate interfaces, determining both the geometry and mechanical behavior. As such, the fast subduction zones and cold slabs were associated with large and steep plate interfaces, which, in turn, had large seismic rates. The subduction velocity could not account for the potential earthquake magnitude diversity that was observed along the trenches. Events with M-w >= 8.5 preferentially occurred in the vicinity of slab edges, where the upper plate was continental and the back-arc strain was neutral. This observation was interpreted in terms of compressive normal stresses along the plate interface. Large lateral ruptures should be promoted in neutral subduction zones due to moderate compressive stresses along the plate interface that allow the rupture to propagate laterally.
ISSN: 1525-2027

hal-00617681
https://hal.archives-ouvertes.fr/hal-00617681
https://hal.archives-ouvertes.fr/hal-00617681/document
https://hal.archives-ouvertes.fr/hal-00617681/file/heuretG32011.pdf
DOI : 10.1029/2010GC003230

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
We review current knowledge of axial skeleton biology in Acipenseriformes with the aim to know whether available data can help in understanding axial anomalies (anomalies of the vertebral column) in reared sturgeons or if further investigations are needed prior to undertake such analysis. In particular, accurate data on axial skeleton development, structure and mineralization are required to understand these pathologies. We show that such knowledge is fragmented and incomplete when compared to the information available in teleost fish. In Acipenseriformes, we only know that (i) the axial skeleton morphology is highly distinctive, as mostly cartilaginous, (ii) the vertebrae are composed of several elements organized around a persistent and unconstricted notochord, and (iii) mineralization only concerns a few of these elements and occurs late in ontogeny, but virtually no descriptions demonstrating the presence of bone (perichondral, membranous...) or mineralized cartilage is available in the literature. In addition, few studies concern axial anomalies in the wild or in rearing conditions, and the determinism of these pathologies is largely unknown. This is in contrast with the numerous studies dealing with the axial skeleton and its anomalies in many farmed teleost species, in which axial anomalies can result from numerous factors, such as unfavourable abiotic conditions, inappropriate nutrition and genetic factors. However, even if some parallels can be established between teleosts and sturgeons, it appears that current knowledge of the axial skeleton in teleosts may not help much in the study of axial anomalies in sturgeons. Knowledge of axial skeleton biology in sturgeon has to be therefore deeply improved prior to undertake investigations focusing on these pathologies.
ISSN: 0175-8659

hal-01545478
https://hal.archives-ouvertes.fr/hal-01545478
DOI : 10.1111/jai.12525

Éditeur(s) : HAL CCSD Société géologique de France
Résumé : International audience
The present study proposes to estimate the influence of climate, eustatism and local tectonics on the sedimentation of a basin margin at the syn-rift to post-rift transition. For that, paleomagnetic measurements were performed on a marine marly-calcareous sedimentary succession ranging from Upper Oligocene to Lower Miocene and located on the northern margin of the Liguro-Provençal basin. The magnetostratigraphic record is correlated to the reference geomagnetic polarity scale [ATNTS04, Lourens et al. 2004] with the help of biostratigraphy based on calcareous nannofossils and planctonic foraminifers [Oudet et al., 2010]. The resulting age model shows that the 100 m-thick sedimentary succession covers a time span of 5 m.y. from the Late Chattian to the Early Burdigalian. Despite several exposure surfaces and a change in the sedimentation rate, no significant hiatus of sedimentation is documented. In addition, we also estimate the paleoenvironmental evolution through the sedimentary succession. Comparing the dated paleoenvironmental reconstruction with global {delta}18O and sea level curves [Miller et al., 2005], we show that the Carry-le-Rouet succession is an excellent paleoclimatic archive. Indeed, coral reefs developed at the glacial-interglacial stage transition marking the end of the Oligocene. In addition, the most diversified coral reefs occurred during the warmest period of the Aquitanian. During rifting, bathymetric variations recorded in the studied succession are related to local synsedimentary tectonics whereas, during oceanic crust accretion, global sea level changes influence the sedimentation. This result allows to characterise and to accurately date the break-up unconformity at 20.35 Ma.
EISSN: 1777-5817

hal-00619040
https://hal.archives-ouvertes.fr/hal-00619040
DOI : 10.2113/gssgfbull.182.1.37