Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A better understanding of the key ecological processes of marine organisms is fundamental to improving design and effective implementation of marine protected areas (MPAs) and marine biodiversity. The movement behavior of coral reef fish is a complex mechanism that is highly linked to species life-history traits, predation risk and food resources. We used passive acoustic telemetry to study monthly, daily and hourly movement patterns and space use in two species, Schoolmaster snapper (Lutjanus apodus) and Stoplight parrotfish (Sparisoma viride). We investigated the spatial overlap between the two species and compared intra-specific spatial overlap between day and night. Presence-absence models showed different diel presence and habitat use patterns between the two species. We constructed a spatial network of the movement patterns, which showed that for both species when fish were detected by the array of receivers most movements were made around the coral reef habitat while occasionally moving to silt habitats. Our results show that most individuals made predictable daily crepuscular migrations between different locations and habitat types, although individual behavioral changes were observed for some individuals across time. Our study also highlights the necessity to consider multiple species during MPA implementation and to take into account the specific biological and ecological traits of each species. The low number of fish detected within the receiver array, as well as the intraspecific variability observed in this study, highlight the need to compare results across species and individuals to be used for MPA management.
ISSN: 0141-1136

hal-01169390
https://hal-univ-perp.archives-ouvertes.fr/hal-01169390
DOI : 10.1016/j.marenvres.2015.06.004

Éditeur(s) : Wiley-blackwell
Résumé : In bird species that have a high movement capacity, dispersal may connect subpopulations over vast geographical regions, with important consequences for the design of conservation management strategies. Here we used a molecular approach to infer the patterns and rates of dispersal among eight Mediterranean subpopulations of the endangered Bonelli's Eagle, based on 245 individuals screened at 17 microsatellite loci. There was moderate genetic differentiation between subpopulations sampled in the western (Iberia and Morocco) and eastern (Cyprus) Mediterranean, whereas differentiation among subpopulations in the former region was weak to moderate and followed a pattern of isolation by distance. Within the western Mediterranean, the small, peripheral and ecologically unique population of southwest Portugal had the lowest genetic diversity and the highest differentiation. The remaining subpopulations formed two loose clusters, one including Morocco and southwest and eastern Spain, and the other northeast Portugal and western and central Spain. Few recent migrants were detected, and they originated primarily from adjacent subpopulations. Our findings suggest that western Mediterranean Bonelli's Eagles may have a large-scale metapopulation structure, with subpopulations connected to some extent by distance-dependent dispersal, probably influenced by natal philopatry and the geographical configuration of subpopulations. The combination of marked ecological and genetic divergence suggests that the peripheral subpopulation of southwest Portugal may be regarded as a distinct management unit.
Ibis (0019-1019) (Wiley-blackwell), 2013-07 , Vol. 155 , N. 3 , P. 485-498

Droits : 2013 British Ornithologists’ Union
http://archimer.ifremer.fr/doc/00148/25924/24018.pdf
DOI:10.1111/ibi.12065
http://archimer.ifremer.fr/doc/00148/25924/

Résumé : By looking at the common thread between 4 programs* in which the IFREMER Palavas (34, Languedoc-Roussillon region in France) station took part, this report show the evolution over 20 years in the perception of the pathology of farmed fish, and of the sea bass in particular (Dicentrarchus labrax). During the 1990’s farming techniques became sufficiently reliable to enable to distinguish between problems of a zootechnical nature and those with a pathological origin. In anticipation of future illnesses, the necessary tools and monitoring were implemented in order to study the immune system of the sea bass. These methods arose from the recent creation of anti-immunoglobin monoclonal probes in the sea bass. These techniques, together with others, served to search for a solution to the nodavirus epidemic which struck in1996. In the absence of a cure for this virus, the research focused on knowledge of the virus, its epidemiology and vaccine development. Despite interesting scientific results, the solution withheld to curb the Nodavirus epidemic was zootechnical. This pragmatic outcome catalysed reflections on the role of pathology, leading to notions of health, animal well-being and image. Management choices in the health of farmed fish stocks became a parameter, amongst others, included in a global commercial and farming policy. * Définition des critères d’évaluation de l’immunocompétente chez le loup et le turbot. UMR1 Université Montpellier II IFREMER ; Nodavirus disease of cultured marine fish in Europe. FAIR PL98 4036 EU; Recherche de moyens de dépistage et prévention de la nodavirose du bar. ANVAR 9804041J ; Welfare and Health in Sustainable Aquaculture WEALTH. E.U N°501984.
En prenant comme fil conducteur les travaux de 4 programmes* auxquels a participé la station IFREMER de Palavas (34), ce rapport montre l’évolution sur 20 ans de la perception de la pathologie des poissons d’élevages et du loup en particulier (Dicentrarchus labrax). Dans les années 1990 les techniques d’élevages devinrent suffisamment fiables pour permettre de distinguer les problèmes d’origines zootechniques de ceux d’origines pathologiques. En prévision des futures maladies potentielles, les outils d’étude et de suivi du système immunitaire spécifique du loup furent mis en place. Ils découlaient de la création récente de sondes monoclonales anti-immunoglobulines de loup. Ces techniques, couplées à d’autres, servirent à chercher une solution à l’épidémie de nodavirose des années 1996. En l’absence de traitement pour un virus l’accent fut mis sur la connaissance du virus, de son épidémiologie et de la vaccination. Bien que les résultats scientifiques furent très satisfaisants la solution trouvée pour juguler l’épidémie de Nodavirose fut zootechnique. Cette issue pragmatique catalysa une réflexion sur le rôle de la pathologie qui maturait depuis plusieurs années et qui déboucha sur la notion de santé, de bien être des animaux et d’image. Les choix de gestion de la santé des cheptels devinrent un paramètre, parmi d’autres, s’incluant dans d’une politique globale d’élevage et commerciale * Définition des critères d’évaluation de l’immunocompétente chez le loup et le turbot. UMR1 Université Montpellier II IFREMER ; Nodavirus disease of cultured marine fish in Europe. FAIR PL98 4036 EU; Recherche de moyens de dépistage et prévention de la nodavirose du bar. ANVAR 9804041J ; Welfare and Health in Sustainable Aquaculture WEALTH. E.U N°501984.

Droits : 2013 Ifremer
http://archimer.ifremer.fr/doc/00167/27866/26103.pdf
http://archimer.ifremer.fr/doc/00167/27866/26105.pdf
http://archimer.ifremer.fr/doc/00167/27866/26106.pdf
http://archimer.ifremer.fr/doc/00167/27866/

Éditeur(s) : Communication at the IIFET Conference Tromso 1998
Résumé : (not controled OCR) like most other caribbean islands, martinique suffers a reduction in fisheries resources and is now a net importer of seafood products since no major expansion of aquaculture production has been done. nevertheless, this island has numerous assets for marine aquaculture development : tropical clean waters, developed infrastructures and market channels, financial support for research, training and extension due to its tight political and economic connection with france. red drum is a subtropical fish introduced in martinique in 1985 from the south of usa for aquaculture purposes. from 1987 to 1993, ifremer worked on rearing techniques in martiniquan conditions. once the farming techniques were perfected, questions raised about red drum marketing potential and of economic viability of red drum farms in order to attract investments and entrepreneurs. that is the reason why a market analysis and a financial analysis have been carried out. the results of these studies indicate that martiniquan fish farming could be profitable, due to the rapid build-up of the facilities and to the sho rt production cycles. the good quality of infrastructures in martinique, the high purchase power of the population in comparison with most caribbean islands and the frequent air links with europe are important comparative advantages. the market analysis has revealed a good potential on the domestic market thanks to the development of the supermarkets, but has underlined the price constraint. for the french market too, production costs have to be lowered in order to compete on a market dominated by salmon.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1998/acte-2546.pdf
http://archimer.ifremer.fr/doc/00000/2546/

Éditeur(s) : HAL CCSD Ethnobotany Research and Applications
Résumé : We examined the limitations of parataxonomic inventories for developing management plans for woody plant resources in tropical rain forests of southwestern Amazonia. Using compilations of herbarium labels, forest personnel interviews and published species descriptions, we assessed the accuracy of common names as parataxonomic units (PUs). We identified 384 common names for 310 harvested woody plant species in the Brazilian state of Acre, of which only 50% were unique to a single taxonomic species. About 10% of common names referred to more than one species, more than half of which included multiple genera. For the 106 species from the Acre sample common to the MAP region including Madre de Dios, Peru and Pando, Bolivia, we identified 198 common names. Splitting was much more frequent in this sample, with more than 80% of species having more than one common name. When the Acre sample was expanded to 131 species from the Brazilian Amazon region, including the states of Amazonas and Para, we identified 740 common names, with nearly 90% of species being represented by more than one common name. Errors and inaccuracy of parataxonomy may contribute to market instability if product orders can not be homogenized within regional markets, and to unsustainable harvests if species are mistakenly lumped into single parataxonomic units. We discuss several programs currently being implemented by our collaborative team in the region to address this issue, including field guides based on digital photography, field courses, and workshops featuring discussions between regional inventory personnel and botanists.
ISSN: 1547-3465

hal-01032404
https://hal.archives-ouvertes.fr/hal-01032404

Éditeur(s) : HAL CCSD
Résumé : International audience
The development of transport infrastructures lead to increase the exposure of population to high noise levels. The objective of this work is to define an indicator representative of the health risk induced by noise pollution in urban environment and adapted to the geographical resolution of IRIS. The methodology for the definition of the indicator considers in a first part the health aspect with the health data for the following effects: annoyance, sleep disturbance and cardiovascular diseases. Then, in a second part, methodology considers some effects related to the urban context since the configuration of urban space can change the exposure of population to noise and the perception of noise. The work is achieved with a GIS software and the input acoustical data comes from noise maps calculated for the END. The indicator seems to be relevant and interesting as it brings health information.
InterNoise 2010 Noise and Sustainability
Lisbonne, Portugal

halshs-00664636
https://halshs.archives-ouvertes.fr/halshs-00664636

Éditeur(s) : HAL CCSD
Résumé : International audience
This study aims at assessing the population vulnerability in the Pasig-Potrero River basin threatened by the recurrent lahars of Mt Pinatubo volcano (Philippines) subsequent to its 1991 eruption. A survey carried out between February and March 1998 enabled us to define and to map different levels of risk perception, the quality of the potential behaviors in the event of further lahars and of the demeanors in case of evacuation order. It was then possible to work out a typology and a cartography of human vulnerability in this study area.This study points out that, even though the risk perception is quite high, some problems remain, notably concerning warning and behaviors in case of evacuation.This work is part of a larger framework including population vulnerability assessment around Mt Pinatubo (social and institutional vulnerability). It also aims at estimating the effects, notably the territorial consequences, occurred as a result of a crisis linked to the volcano and its lahars, and that has been lasting for eight years. These results should allow to elaborate some risk and disaster scenarios. They are intended to be used as operational purposes in crises management such as relief arrangement, land use planning.
Cette étude a pour objectif d'évaluer la vulnérabilité des populations du bassin de la rivière Pasig-Potrero menacé par les lahars récurrents du volcan Pinatubo (Philippines) suite à l'éruption de 1991. A partir d'une campagne d'enquêtes sur le terrain, réalisée entre février et mars 1998, on a pu définir et cartographier différents niveaux de perception du risque, la qualité des comportements potentiels face aux lahars ainsi que des attitudes en cas d'ordre d'évacuation. Ces données ont ensuite permis de réaliser une typologie et une cartographie de la vulnérabilité dans le secteur d'étude.Il en ressort que si la perception du risque est assez élevée, des problèmes subsistent, notamment en matière d'alerte et de comportements en cas d'évacuation. La qualité de l'alerte a aussi montré, dans le passé, des carences qu'il convient aujourd'hui de combler.Ce travail s’inscrit dans un cadre plus large d'évaluation de la vulnérabilité des populations face au volcan Pinatubo (vulnérabilité sociale, institutionnelle...) el des conséquences, notamment territoriales, de huit années de crises liées à l'éruption, puis aux lahars.Ces conclusions peuvent guider l'élaboration de scénarios de risque et de catastrophe, utiles à des fins opérationnelles (planification des secours, aide à la gestion des crises, aménagement du territoire...).
Pangea

hal-01169313
https://hal.archives-ouvertes.fr/hal-01169313
https://hal.archives-ouvertes.fr/hal-01169313/document
https://hal.archives-ouvertes.fr/hal-01169313/file/Gaillard%20D%27Ercole%20Leone%201998%20-%20Cartographie%20de%20la%20vuln%C3%A9rabilit%C3%A9%20des%20populations%20Pinatubo%20Philippines.pdf

Éditeur(s) : Elsevier Science Bv
Résumé : Small-scale fisheries have traditionally received less research effort than large-scale fisheries and are generally under-studied in Europe. In spite of their comparatively low volume of catches and economic importance, small-scale fisheries are socially important and an integral part of the European coastal zone. Considering the high heterogeneity of situations and the paucity of quantitative data, we used an analytical methodology based on the comparative method. We carried out an analysis of small-scale fisheries (SSFs) in Europe based on a selection of nine case studies. Our objective was to obtain a comprehensive description of small-scale fleets covering different areas/fisheries/species, encompassing the diversity and specific conditions under which SSFs operate, in order to demonstrate the ecological and social sustainability of this often overlooked fisheries segment. A common approach formulated so that the case studies could be compared with the case histories of other competing users, required that for each set of criteria – technical, biological, socio-economic, and institutional – a set of relevant items and indicators was established. An analysis of characteristics common to the selected case studies is conducted and an attempt made to extend our comparisons to the whole of the European Union. Our results show that (as compared with large-scale fleets, their main competitor) small-scale fleets: (i) are composed of smaller vessels and, consequently, travel lower distances to fishing grounds, and are more reliant on coastal areas; (ii) have smaller crews (although the global employment figure is similar to that of large-scale fleets in Europe); (iii) use mostly, but not exclusively, passive gears; (iv) use multi-purpose fishing approaches, and can change the fish species they target during the year; (v) have lower extraction rates; (vi) have lower total capital investments (including fishing rights), turnover and costs; and (vii) have lower fuel consumption, making them less sensitive to changing oil prices. Dependence on subsidies is lower (viii). Involvement in fisheries management is variable, conservation and access regulation measures are largely local in origin. For the selected case studies, the most significant competitors are large-scale fleets, and recreational fisheries, but other sources of interaction (water quality, invasive species, etc.) cannot be ignored.
Fisheries Research (0165-7836) (Elsevier Science Bv), 2013-02 , Vol. 140 , P. 1-13

Droits : 2012 Elsevier B.V. All rights reserved
http://archimer.ifremer.fr/doc/00118/22934/20757.pdf
DOI:10.1016/j.fishres.2012.11.008
http://archimer.ifremer.fr/doc/00118/22934/

Éditeur(s) : Pêche thonière et dispositifs de concentration de poissons, Caribbean-Martinique, 15-19 Oct 1999
Résumé : Installation and maintenance of FADs by the Government of Guam began in 1979, initially with funding from the Salstonstall-Kennedy Act through the Pacific Tuna Development Foundation. Current funding for the Guam FAD project is provided through the Dingell-Johnson/Wallop-Breaux Sport Fish Restoration programme, a Federal Aid Project funded by taxes collected on the purchase of fishing equipment and motorboat fuels nationwide. There are now sixteen operational FAD sites in Guam's waters. At a cost of approximately US$10,000 per system, concern for the rising costs of replacing and maintaining FAD systems has prompted the Department of Agriculture's Division of Aquatic and Wildlife Resources (DAWR) to investigate alternative FAD maintenance strategies and system design. Several cost-cutting measures being considered include the use of reliable solar-powered navigation lights to reduce the number of maintenance trips required, and switching to a newer generation of lighter, more durable buoys and mooring systems. Average time on station for a dawr fad system is nearing two years. Interestingly, in most cases where an errant system is recovered, the failure in the mooring system was observed to occur at a depth from 35 to 500 metres. These observations have led to speculation that additional protection of the mooring line down to 500 m may result in doubling the average time on station of most FAD systems.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00042/15324/12650.pdf
http://archimer.ifremer.fr/doc/00042/15324/

Éditeur(s) : Oxford university press
Résumé : The results of a survey on fishers' perceptions of recent changes in the eastern English Channel ecosystem carried out in 2006 were compared with fishery and bottom-trawl survey data. A hypothesis-testing framework was used, testing the null hypothesis that fishers' statements were true, which permitted evaluation of both agreement and disagreement. Overall good agreement between fishers' statements and scientific data was found, and both sources suggested that the fish community in the Channel is undergoing large changes, among which are decreases in some commercially important species; in addition, a number of human pressures impact the ecosystem. Fishers had an accurate perception of changes and their time-frames, but not necessarily of their causes. They had a greater power than survey data to detect recent changes, showing that fishers' perceptions have great potential as early warning signals.
ICES Journal of Marine Science (1054-3139) (Oxford university press), 2008-09 , Vol. 65 , N. 6 , P. 1057-1068

Droits : 2008 International Council for the Exploration of the Sea. Published by Oxford Journals.
http://archimer.ifremer.fr/doc/2008/publication-4474.pdf
DOI:10.1093/icesjms/fsn062
http://archimer.ifremer.fr/doc/00000/4474/

Résumé : Genetic consequences of production of Pacific oyster larval in hatchery: drift and selective pressures related to rearing practices. In order to study the genetic consequences of production of oyster larvae in hatcheries, two factors were examined: the effects of discarding the smallest larvae (i.e. culling) and temperature effects. A mixed-family approach was used in order to infer the genetic composition of the larval population. The results show that high polymorphic microsatellite-based family assignment is a powerful tool for the study of bivalve larvae genetics. Culling by selective sieving is an advantageous practice at a phenotypic scale, but also represents a substantial risk for diversity loss if parentage assignment is not introduced as a breeding practice. Settlement of slow growing larvae contributes to minimizing the variability of reproductive success and therefore to maximizing genetic diversity. These results corroborate the lower estimations of variability made on broodstocks from French commercial hatcheries relative to natural populations. Temperature exerts an influence on the expression of genetic variability for larval growth. A temperature of 26°C, coupled with culling could amplify the selective effect. Furthermore, selection of fast growing larvae has proven to counteract inbreeding depression at this stage. Genetic effects of intensive rearing conditions are significant and should be taken into account in hatchery practices, especially in terms of genetic diversity management.
Afin d'étudier les conséquences génétiques des pratiques de production de larves en écloserie d'huître creuse, deux facteurs ont été examinés : l'effet de l'élimination des plus petites larves et l'effet de la température. Une approche de familles élevées en mélange a été utilisée afin d'avoir accès à l'information génétique au stade larvaire. Les résultats obtenus montrent que l'assignation de parenté basée sur des marqueurs microsatellites hautement discriminants est un outil performant pour les études génétiques en phase larvaire. Bien qu'avantageuse d'un point de vue phénotypique, la pratique de tamisage sélectif représente un risque substantiel de perte de diversité si cette pratique n'est pas associée à une assignation de parentée par empreintes génétiques. La fixation des larves à croissance lente permet de minimiser la variabilité du succès reproducteur et de fait, de maximiser la variabilité génétique. Ces résultats corroborent les estimations de variabilité sur les stocks d'écloseries commerciales françaises où l'on constate une diversité allélique inférieure à celle de populations issues du milieu naturel. La température exerce également une influence sur la précocité de l'expression de la variabilité génétique pour la croissance larvaire. Ainsi une température élevée (26°C) associée à une procédure de tamisage peut amplifier l'effet sélectif. Enfin, la sélection de larves à croissance rapide semble démontrée, s'opposant à la dépression de consanguinité présumée en phase larvaire. Les conditions d'élevage peuvent donc avoir un effet génétique significatif qui devrait être pris en considération dans les pratiques d'écloserie, notamment dans la gestion de la diversité génétique.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2006/rapport-1459.pdf
http://archimer.ifremer.fr/doc/00000/1459/

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : Le milieu marin de la Mer des Caraïbes est composé de trois écosystèmes principaux : les récifs coralliens, les mangroves et les herbiers, qui abritent une faune et une flore exceptionnelles. Mais l’équilibre fragile de ces espaces est menacé par les nombreuses activités humaines qui les dégradent progressivement. Face aux enjeux socio-économiques qu’ils représentent pour les pays caribéens, ces derniers ont établi un cadre juridique à l’échelle régionale pour la protection et la gestion de leur ressource marine, la Convention de Carthagène. Après avoir dressé un tableau de la situation environnementale des principaux écosystèmes marins caribéens, il convient de faire un point sur les modes de gestion mis en œuvre pour les préserver.
The marine environment of the Caribbean Sea is composed primarily of three main ecosystems: coral reefs, mangroves and seagrasses, home to fauna and flora. But the delicate balance of these areas is threatened by many human activities that deteriorate gradually deteriorated them. Deal with socio-economic issues around these resources, Caribbean countries have established a legal framework at the regional level to ensure the protection and management of marine resources (the Cartagena Convention). After drawing up an overview of the environmental situation of the main Caribbean marine ecosystems, it should present the management mode adopted to preserve them.
Caraïbes

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.4343
http://journals.openedition.org/etudescaribeennes/4343

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : The tropical coast of Queensland, Australia is experiencing rapid population and tourism growth. Heavy development pressure is being placed on the biophysical environment, which includes the largest sand island in the world (World Heritage listed), Fraser Island. Despite the existence of State planning legislation oriented towards environmental sustainability, it is apparent that little, if any, regard is being paid to the long-term effects of resort and canal-estate development on the underlying biophysical environment of the coast and islands. While the remarkable surface features of the tropical coastal environment such as the surf beaches, the unique dune lakes, and the coastal vegetation, as well as the prolific wildlife, are used as selling points for new settlement and above all tourism, little is known or apparently of major concern with respect to the long term environmental impact of coastal development. While the crowding effect of large numbers of visitors and their impact on the natural environment - through significant degradation, site hardening or lack of proper on-site management – has been identified as a particular problem in certain areas, there is little knowledge of impacts on the underlying coastal geomorphology. In particular, developmental choices are often made in ignorance of, or disregard of, the widespread existence of tropical acid sulfate soils in that coastal environment. Reactive soils such as these can, and do, greatly affect the biophysical outcomes of a development if they are exposed. This paper documents such impacts in the form of a case study of the acid sulfate soil problem in relation to the development of tourist resorts, and suggests that part of the solution is for the State Government to insist on enforceable standards relating to their development for tourism in the coastal zone. These would reduce the use by many resort owners of fancy golf course developments as an environmental cover up to make it look as if they put a lot of effort into protecting the environment….
La côte tropicale du Queensland est confrontée à un accroissement rapide de la population. Les fortes pressions anthropiques pèsent sur le milieu biophysique, qui comprend notamment a plus grande île de sable du monde, un site classé Patrimoine de l’Humanité, Port Hinchinbrook et Fraser Island. Malgré l’existence d’une législation nationale orientée vers la préservation de l’environnement, il est manifeste que peu d’attention est accordée aux effets à long terme des sites touristiques et du développement de l’urbanisation sur ces franges côtières sensibles. L’aspect massif des flux de visiteurs et leurs impacts sur le milieu naturel a été identifié comme un sujet d’inquiétude particulier dans certaines régions. La connaissance des impacts sur la géomorphologie côtière souterraine est très réduite et les choix de développement sont souvent faits dans l’ignorance ou au mépris de la présence répandue de terrains de sulfate d’acide dans ce milieu côtier. Des sols réactifs comme ceux-là peuvent affecter, et affectent, grandement les résultats géophysiques d’un développement lorsqu’ils sont connus. Des études de cas sur le problème des sols de sulfate d’acide suggèrent qu’une partie de la solution pour le gouvernement de l’Etat du Queensland est d’imposer des normes obligatoires pour le développement du tourisme dans la zone côtière.
Australie
Queensland

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.1272
http://journals.openedition.org/etudescaribeennes/1272

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Clin Microbiol Infect ABSTRACT: Atypical Toxoplasma gondii strains, unrelated to archetypal clonal lineages (I, II, III), have been reported more frequently over the last decade in areas other than Europe and North America. A newly described form of toxoplasmosis, 'Amazonian toxoplasmosis' (AT), has been reported since 2002 in French Guiana. It is characterized by severe cases and atypical strains linked to a neotropical forest-based cycle. We report on the cases of AT that required intensive care management. We performed a prospective observational study on hospitalized adults in the Intensive Care Unit (ICU) from 2002 to 2008. Clinical and laboratory data, microbiological findings and outcomes were recorded. Data, including the ICU simplified acute physiology score and the pneumonia severity index, were calculated. Epidemiological risk factors for AT were assessed through questionnaires. Eleven non-immunodeficient patients were admitted to the ICU in Cayenne for life-threatening pneumonia associated with disseminated toxoplasmosis. Mechanical ventilation was necessary in seven patients, four of whom required immediate orotracheal intubation. Cardiac and ophthalmological abnormalities were found in five and four patients, respectively. One patient died from multiple organ failure. The genetic characterization of Toxoplasma DNA using six microsatellite markers revealed unique and atypical genotypes in eight patients. All patients presented epidemiological risk factors for AT. In French Guiana, significant T. gondii-related infectious syndrome associated with the lungs, a high level of LDH activity and the reported risk factors for AT was strongly suggestive of disseminated toxoplasmosis with a possible trend toward life-threatening pneumonia.
ISSN: 1198-743X

hal-00678752
https://hal-unilim.archives-ouvertes.fr/hal-00678752
DOI : 10.1111/j.1469-0691.2011.03648.x
PUBMED : 21958195

Éditeur(s) : HAL CCSD Wiley/Blackwell
Résumé : International audience
Marine fishes exhibit spectacular phenotypic changes during their ontogeny, and the identification of their early stages is challenging due to the paucity of diagnostic morphological characters at the species level. Meanwhile, the importance of early life stages in dispersal and connectivity has recently experienced an increasing interest in conservation programmes for coral reef fishes. This study aims at assessing the effectiveness of DNA barcoding for the automated identification of coral reef fish larvae through large-scale ecosystemic sampling. Fish larvae were mainly collected using bongo nets and light traps around Moorea between September 2008 and August 2010 in 10 sites distributed in open waters. Fish larvae ranged from 2 to 100 mm of total length, with the most abundant individuals being <5 mm. Among the 505 individuals DNA barcoded, 373 larvae (i.e. 75%) were identified to the species level. A total of 106 species were detected, among which 11 corresponded to pelagic and bathypelagic species, while 95 corresponded to species observed at the adult stage on neighbouring reefs. This study highlights the benefits and pitfalls of using standardized molecular systems for species identification and illustrates the new possibilities enabled by DNA barcoding for future work on coral reef fish larval ecology.
ISSN: 1755-098X

hal-01342973
https://hal-univ-perp.archives-ouvertes.fr/hal-01342973
DOI : 10.1111/1755-0998.12293

Éditeur(s) : Elsevier
Résumé : The rapid development of the albacore tuna (Thunnus alalunga) driftnet fishery in the Pay of Biscay (Atlantic ocean, France) has incited European management authorities to ask for a study of its ecological impact on populations of common dolphins and striped dolphins. A programme with onboard observers has been led during 1992 and 1993, and a sighting survey has allowed the evaluation of the abundances of fractions of populations in the studied area. For the population of common dolphins, the biological parameter estimation has allowed the building of a discrete age-structured model based on a Leslie matrix. Sensitivity studies have been conducted using four model parameters (age of first reproduction, interval between births, juvenile and adult survival rates). Results show that the increase rate of the population presents the highest sensitivity versus adult survival rate and, in second place versus the interval between births.
Le développement rapide de la pêche au thon germon (Thunnus alalunga) au filet maillant dérivant dans le golfe de Gascogne a incité les instances de gestion européenne à demander une étude de son impact écologique sur les populations de dauphin commun et de dauphin bleu et blanc. Des observateurs embarqués à bord ont mené au cours des années 1992 et 1993 une campagne d'échantillonnage sur un parcours linéaire, ce qui a permis d'estimer l'abondance des fractions de populations présentes sur la zone étudiée. Pour la population de dauphins communs, l'estimation des paramètres biologiques a permis de construire un modèle à pas discret structuré en âge faisant appel à une matrice de Leslie. Des études de sensibilité ont été réalisées selon quatre paramètres du modèle; âge de première mise bas, intervalle entre mises bas, taux de survie des juvéniles, taux de survie des adultes sur les deux sexes confondus. Les résultats montrent que le taux d'accroissement de la population présente la plus forte sensibilité, en fonction du taux de survie des adultes avec, en deuxième ordre, l'intervalle entre mises bas.
Aquatic Living Resources (0990-7440) (Elsevier), 1998-11 , Vol. 11 , N. 6 , P. 359-369

Droits : 1998 Published by Elsevier SAS
http://archimer.ifremer.fr/doc/1998/publication-865.pdf
DOI:10.1016/S0990-7440(99)80001-1
http://archimer.ifremer.fr/doc/00000/865/

Éditeur(s) : ISTPM
Résumé : All considerations about halieutic stocks inevitably had to attain the recognition of relations which are established between the resource and its natural environment. These phenomenons are exposed in the first part. About consequences of human interventions, both of these aspects must be taken into account: the introduction of new species and fishing. Second part deals with the use of models in stock management.
Une réflexion sur la gestion des stocks halieutiques devait nécessairement aboutir à la reconnaissance des relations liant la ressource à son environnement naturel : action des facteurs abiotiques sur l'état des stocks et la distribution des espèces, et inter-relation entre les composantes biologiques ; à l'appréciation des conséquences de l'intervention humaine sur l'équilibre des écosystèmes. Ce sont ces phénomènes qui ont été présentés dans une première partie. En ce qui concerne l'influence des facteurs abiotiques, il est rappelé que la mise en place de réseaux de surveillance systématique a permis de progresser dans le domaine des recherches hydroclimatiques et dans la compréhension des connexions pouvant exister entre facteurs abiotiques et phénomènes biologiques. d'ordre biologique sont principalement envisagées au niveau des relations de prédation. Celles-ci ne peuvent être correctement appréhendées que par le biais du comportement trophique des diverses espèces et des problèmes généraux de nutrition, Les conséquences de l'intervention humaine sont envisagées sous deux aspects : l'introduction d'espèces nouvelles et la pêche. L'action de pêche entraîne des interactions d'ordre technologique dans les pêcheries plurispécifiques, dont les effets ne peuvent être ignorés et doivent être pris en compte par les modèles de gestion. La deuxième partie traite de l'utilisation des modèles dans la gestion commune de plusieurs stocks. Les modèles dits « multispécifiques », tenant compte des interactions d'ordre biologique (prédation), supposent un support de connaissance scientifique qui fait actuellement défaut. Leur utilisation comme outil de gestion devrait être précédée d'une amélioration des connaissances générales halieutiques. Les interactions d'ordre technologique ont été prises en compte dans l'approche plurispécifique de LE GUEN et FoNTANA (1971) qui permet de rechercher le meilleur compromis dans l'exploitation simultanée de plusieurs espèces, sur des bases pécuniaires plutôt que pondérales. GOHIN et LAUREC (1981) ont amélioré l'approche en tenant compte en particulier de l'ensemble de la courbe de sélectivité et non seulement du point L50. Quoi qu'il en soit, les modèles classiques mono-spécifiques, bien qu'imparfaits, restent encore très utiles ; ils peuvent donner des réponses satisfaisantes à des questions simples mais essentielles. Un développement de la recherche en hydrobioclimatologie est indispensable pour prévoir la variabilité dans le recrutement, la disponibilité, la capturabilité... Les relations de prédation entre espèces méritent d'être mieux cernées. Enfin, chaque fois que cela sera possible, les composantes socio-économiques et politiques devront être prises en compte, le bon sens remplaçant au besoin les modèles. Cet ouvrage n'a pas la prétention de traiter dans le fond tous les sujets abordés. Aussi, le lecteur qui désirera avoir une réflexion plus approfondie sur certains sujets trouvera à la fin du document une bibliographie, sinon exhaustive du moins très fournie.
Revue des Travaux de l'Institut des Pêches Maritimes (0035-2276) (ISTPM), 1982-03 , Vol. 46 , N. 1 , P. 5-70

Droits : Ifremer
http://archimer.ifremer.fr/doc/1982/publication-1859.pdf
http://archimer.ifremer.fr/doc/00000/1859/

Éditeur(s) : HAL CCSD CSIRO Publishing
Résumé : International audience
The present study assessed the occurrence of multiple paternity in four litters of bull shark Carcharhinus leucas (n¼5, 8, 9 and 11 embryos) sampled at Reunion Island in the Western Indian Ocean. Using 21 microsatellite loci, we revealed that two litters were generated from two sires each, demonstrating for the first time multiple paternity for this species. We also reported a high paternal skew (10 : 1 in Litter 1 and 7 : 1 in Litter 3), which may be because of postcopulatory or post-zygotic selection processes. These results contribute to a better understanding of the reproductive behaviour of the bull shark, which remains poorly documented. The present study must be expanded to assess the frequency of multiple paternity in this species, and to test for genetic or cryptic benefits (convenience polyandry), which is important for long-term conservation and management plans.
ISSN: 1323-1650

hal-01253775
https://hal.archives-ouvertes.fr/hal-01253775
https://hal.archives-ouvertes.fr/hal-01253775/document
https://hal.archives-ouvertes.fr/hal-01253775/file/Pirog%20et%20al.%20-%202015%20-%20First%20evidence%20of%20multiple%20paternity%20in%20the%20bull%20s_hal.pdf
DOI : 10.1071/mf15255

Éditeur(s) : HAL CCSD Wiley
Résumé :  
The complex structure of tree bark reflects its many functions, which include structural support as well as defence against fire, pests and pathogens. Thick bark, however, might limit respiration by the living tissues of the trunk. Nevertheless, little research has addressed community-level variation in bark thickness, and to the best of our knowledge, no one has tested multiple hypotheses to explain variation in bark thickness. We conducted an extensive survey of bark thickness within and among species of trees in the tropical rain forests of French Guiana. Trunk bark thickness increased by 1.2 mm per 10 cm increase in stem diameter, and varied widely at all taxonomic levels. Mean trunk bark thickness was 4.5 mm (range: 0.5-29 mm), which was less that found in two Amazonian rain forests in previous studies. This survey of bark thickness should be of use for forest management since tree survival through fire is strongly predicted by bark thickness. We combined the survey data with multiple datasets to test several functional hypotheses proposed to explain variation in bark thickness. We found bark to provide an average of 10% of the flexural rigidity of tree stems, which was substantially less than that found in the only other study of bark stiffness. Bark thickness was uncorrelated with species' association with fire-prone habitats, suggesting that the influence of fire on bark thickness does not extend into moist Forests. There was also little evidence that bark thickness is affected by its function as a defence against herbivory. Nor was there evidence that thick bark limits trunk respiration. A re-analysis of previously collected anatomical data indicated that variation in rhytidome (non-conducting outer bark) thickness explains much of the variation in overall bark thickness. As rhytidome is primarily involved in protecting the living tissues of the trunk, we suggest that bark thickness is driven mostly by its defensive function. Functional explanations for the variation in bark thickness were not clear-cut. Nevertheless, this study provides a foundation for further investigation of the functional bases of bark in tropical trees.
ISSN: 0269-8463

hal-01032124
https://hal.archives-ouvertes.fr/hal-01032124
DOI : 10.1111/j.1365-2435.2010.01736.x

Éditeur(s) : Neidine Editeurs
Résumé : This text presents a review of the various technologies for exploitation of renewable marine energy resources. Il exposes the solutions offered by tide and currents, swell and waves, the marine wind energy, the Ocean Thermal Energy, the osmotic energy and specifies the various degrees of technological maturity for each solution. This new economic activity on the littoral and coastal areas also contains indirect effects in terms of management which are called back. The inter-tropical islands benefit from a very vast potential for the insertion of these renewable sources of energy in their mix of energy production. Although the exploitation of these energies is not still the object of a programming in New Caledonia, an overview of the specificities of the country allows to think that certain medium term solutions will be possible.
Ce texte présente une revue des différentes technologies d’exploitation des ressources énergétiques qui peuvent être tirées de la mer. On expose ainsi les solutions offertes par la marée et les courants, la houle et les vagues, l’éolien marin, l’énergie thermique des mers, l’énergie osmotique et on précise les degrés de maturité technologique très échelonnés de chaque solution. Cette nouvelle activité économique sur l’espace littoral et côtier comporte également des effets indirects en termes d’aménagement qui sont rappelés. Les îles inter-tropicales bénéficient d’un très vaste potentiel pour l’insertion de ces EMR dans leur mix de production énergétique. Bien que l’exploitation de ces énergies ne fasse pas encore l’objet d’une programmation en Nouvelle-Calédonie, un rappel des spécificités du pays permet de penser que certaines solutions seront envisageables à moyen terme.
Tai Kona (2269-7535) (Neidine Editeurs), 2013-09 , N. 4 , P. 24-40

Droits : Tai kona
http://archimer.ifremer.fr/doc/00174/28504/26853.pdf
http://archimer.ifremer.fr/doc/00174/28504/