Éditeur(s) : HAL CCSD Society for Molecular Biology and Evolution
Résumé : International audience
Microsatellites (SSRs) are highly susceptible to expansions and contractions. When located in a coding sequence, the insertion or the deletion of a single unit for a mono-, di-, tetra-, or penta(nucleotide)-SSR creates a frameshift. As a consequence, one would expect to find only very few of these SSRs in coding sequences because of their strong deleterious potential. Unexpectedly, genomes contain many coding SSRs of all types. Here, we report on a study of their evolution in a phylogenetic context using the genomes of four primates: human, chimpanzee, orangutan, and macaque. In a set of 5,015 orthologous genes unambiguously aligned among the four species, we show that, except for tri- and hexa-SSRs, for which insertions and deletions are frequently observed, SSRs in coding regions evolve mainly by substitutions. We show that the rate of substitution in all types of coding SSRs is typically two times higher than in the rest of coding sequences. Additionally, we observe that although numerous coding SSRs are created and lost by substitutions in the lineages, their numbers remain constant. This last observation suggests that the coding SSRs have reached equilibrium. We hypothesize that this equilibrium involves a combination of mutation, drift, and selection. We thus estimated the fitness cost of mono-SSRs and show that it increases with the number of units. We finally show that the cost of coding mono-SSRs greatly varies from function to function, suggesting that the strength of the selection that acts against them can be correlated to gene functions.
ISSN: 1759-6653

hal-01544762
https://hal.archives-ouvertes.fr/hal-01544762
DOI : 10.1093/gbe/evt003

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
Heartwood/sapwood profile and the tradeoff between trunk and crown increment in a natural forest: the case study of a tropical tree (Dicorynia guianensis Amsh., Fabaceae) Key message Sapwood area and the radial growth rate of the trunk follow the same pattern at breast height, with an initial increase and subsequent constant value, resulting from the increasing growth allocation toward the crown rather than tree decline. Heartwood area and heartwood volume in the trunk increase more rapidly after this shift occurs. Abstract Sapwood (SW) and heartwood (HW) are two functionally distinct classifications of wood in perennial stems for which quantities can vary greatly in tropical trees. Numerous positive correlations have been found between the radial growth rate (RGR) and SW quantity; however, variations in the SW/HW quantities have not been studied in light of the ontogenetic variation of RGR. Wood core sampling, intensive measurements of tree structure (number of branches, stem volumes), and radial growth monitoring were performed on an abundant and highly exploited tree species in French Guiana (Dicorynia guianensis) to investigate the relationship between RGR, SW/HW quantity, tree structure, and their variations on the course of a tree's ontogeny. SW area and RGR followed the same pattern of variation throughout tree development, both increasing first and reaching a steady state after 50 cm DBH (diameter at breast height). After this value, we observed a strong increase in both the HW area and HW volume increment, concomitant with a more rapid increase in crown volume. The stabilization of RGR for trees with DBH >50 cm was related not to a tree's decline but rather to an increasing wood allocation to the crown, confirming that RGR at breast height is a poor indicator of whole-tree growth for bigger individuals. We also confirmed that HW formation is an ontogenetic process managing SW quantity that is continuously and increasingly produced within the crown as the tree grows. This study highlights the effect of growth-mediated ontogenetic changes on the localization of water and carbohydrate storage within a tree, resulting from SW and HW dynamics throughout tree ontogeny.
ISSN: 0931-1890

hal-01654003
https://hal.archives-ouvertes.fr/hal-01654003
https://hal.archives-ouvertes.fr/hal-01654003/document
https://hal.archives-ouvertes.fr/hal-01654003/file/Lehnebach%20et%20al.%E2%80%94Trees%202016-%20Own%20version.pdf
DOI : 10.1007/s00468-016-1473-7

Éditeur(s) : HAL CCSD Wiley
Résumé : International audience
Le but de cette étude est de relier les variations des descripteurs de structure (densité du peuplement, surface terrière, biomasse aérienne) et de dynamique (croissance des arbres, taux de mortalité et de recrutement, flux de biomasse) de la forêt tropicale à la surface des parcelles forestières et à l'intervalle de temps entre les inventaires forestiers. Un jeu de données provenant d'un large réseau de parcelles recensé tous les 2 ans sur une période de 16 ans a été utilisé pour développer et paramétrer un nouveau modèle statistique de prédictions des coefficients de variations pour chacun des descripteurs étudiés. Plus de 90 % de la variabilité de ces coefficients de variation est prédit par un modèle statistique qui inclut la taille de la parcelle et l'intervalle de temps entre les inventaires. Tous les descripteurs de structure de la forêt varient de moins de 10% pour des parcelles de taille supérieure à 2 ha. Parmi les descripteurs de la dynamique forestière, le flux sortant de biomasse aérienne est le plus variable. Cinq parcelles de 6.25 ha sont nécessaires pour estimer sa moyenne, sur une période 16 ans, avec une erreur de 20 % sur la moyenne. Ceci contraste avec un flux entrant de biomasse aérienne, via la croissance et le recrutement, relativement constant. La croissance des arbres est remarquablement bien estimée avec moins de 15 % de variabilité pour une parcelle de 2 ha recensée tous les 2 ans. Ce travail fournit une méthode facile de quantification des limitations des jeux de données utilisés pour estimer les descripteurs de structure et de dynamique forestière. Ceci est un prérequis indispensable à l'analyse des effets du changement global sur les forêts tropicales.
ISSN: 0006-3606

hal-01093212
https://hal-agroparistech.archives-ouvertes.fr/hal-01093212
DOI : 10.1111/j.1744-7429.2010.00644.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The aim of this study was to assess the effects of the Hooper's Index variations (i.e., self-ratings of fatigue, stress, delayed onset muscle soreness (DOMS), and sleep) on rating of perceived exertion during a 10 min, submaximal exercise training session (RPE-10 min) and then check the stability and the internal consistency of RPE-10 min. Seventeen junior soccer players took part in this study. The individual Hooper's indices takenbefore each training session were correlated with RPE-10 min during a constant intensity and duration effort (10 min) using Pearson product moment correlation. Intraclass correlation (ICC) was used to assess the internal consistency of the RPE-10 min. All individual correlations between RPE-10 min and quality of sleep and quantity of fatigue, stress, and DOMS were non-significant (p N 0.05). No significant correlations wereresulted between RPE-10 min and Hooper's Index in all athletes. The ICC of RPE-10 min was 0.77 thus demonstrating internal consistency. The results of the present study demonstrated the objectivity and utility of RPE as a psychological tool for monitoring training during traditional soccer training. Therefore, the results of the present study suggest that fatigue, stress, DOMS and sleep are not major contributors of perceived exertionduring traditional soccer training without excessive training loads. It seems that psychobiological factors other than fatigue, stress, DOMS and sleep may have mediated the 10 min exercise perceptual intensity.
ISSN: 0031-9384

hal-01163440
https://hal.univ-antilles.fr/hal-01163440
DOI : 10.1016/j.physbeh.2013.06.016

Résumé : L’objet de cette thèse est l’étude des comportements mécanique et à la corrosion d’un nouveau système de fondation, dit pieux SPIRMEC, adapté aux structures légères. Le travail s’est focalisé sur deux grands aspects. Le premier aspect concerne l’analyse du comportement sous chargement axiale des pieux SPIRMEC sur la base de l’expérimentation et de la modélisation numérique dans un sol mou non cohésif. Quant au deuxième aspect, il traite du problème de la corrosion de l’acier constituant le pieu dans un environnement tropical humide. Le comportement des pieux SPIRMEC sous une charge axiale de traction, dans un sol fin non cohésif, a montré le développement d’une surface cylindrique de rupture. Celle-ci ne dépend pas de la configuration géométrique des pieux tel que : l’espacement S, le diamètre d’hélice Dh et le diamètre du tube d. En adoptant ce critère de rupture et à l’aide d’une analyse statistique des données, nous avons proposé quatre méthodes analytiques de prédiction de la capacité portante des pieux SPIRMEC à partir des essais in-situ et au laboratoire qui sont: •Méthode CPT basée sur la résistance de pointe pénétromètrique (essai CPT), •Méthode MPT basée sur la pression limite pressiomètrique (essai MPT), •Méthode du couple d’installation, •Méthode analytique basée sur les paramètres de cisaillement de sol notamment l’angle de frottement interne (essais triaxial et boîte de cisaillement). Ces méthodes tiennent compte de la géométrie du pieu, du procédé de mise en oeuvre et de la compacité du sol. L’analyse de performance des méthodes proposées a montré que les méthodes analytique et CPT représentent mieux le comportement des pieux testés. La modélisation numérique du comportement des pieux SPIRMEC sous charge axiale de traction a été également étudiée à l’aide du code de calcul Plaxis 2D. Un modèle axisymétrique a été adopté pour modéliser la géométrie de la structure. Le modèle de comportement hardening soil a été retenu pour modéliser le comportement élastoplastiq des couches de sol. Un modèle élastique linéaire a été retenu pour le pieu. Quant au comportement de l’interface sol-structure, il a été pris en compte par un modèle élastoplastique basé sur les critères de Mohr-Coulomb. L’expansion du sol résultant de l’installation des pieux a été approchée par une cavité cylindrique. Cette dernière a été modélisée par des déformations volumiques anisotropes. Nous avons constaté, qu’appliquer une déformation volumique de l’ordre de 40% permet une bonne concordance entre les résultats numériques et expérimentaux. L’étude paramétrique nous a également permis de constater l’existence d’une variation linéaire entre la capacité portante et l’espacement S. Le comportement de l’acier galvanisé dans le sol a été également étudié au moyen de trois approches: électrochimique, visuelles grâce au microscope électronique et gravimétrique. Les tests électrochimiques de corrosion du zinc ont été réalisés dans la solution de sol artificielle pour deux périodes bien distinctes : saison des pluies et après 8 mois de contact sol-pieu. Une forte dépendance est constatée de la vitesse de corrosion de zinc au pH et à la conductivité de la solution. La vitesse de corrosion est plus importante en saison des pluies qu’après 8 mois de contact de pieu avec le sol. Les fortes concentrations en sulfates semblent augmenter la vitesse de corrosion. Les analyses menées au MEB montrent que la zone de fluctuation de nappe et en surface externe (sol/air) sont les zones les plus corrodées. La comparaison entre les différentes techniques d’évaluation de la vitesse de corrosion a montré que l’eau de nappe peut être utilisée comme un milieu représentatif du profil chimique d’un sol non cohésif et légèrement granulaire.
The purpose of this thesis is to study the both behaviors mechanical and of the corrosion of a new foundation system, called spirec piles, for lightweight structures. The work was based on two main aspects. The first aspect concerns the analysis of behavior of the spirmec piles under axial loading on the basis of experimental and numerical modeling in a non-cohesive soft soil. On the second aspect, it addresses the problem of corrosion of steel forming the pile in a humid tropical environment. The behavior of the tested piles under axial traction load, in a non-cohesive soil, showed the development of a cylindrical surface of failure. This does not depend on the geometrical configuration of the tested piles such that: the spacing s, the helix diameter dh and the diameter of the shaft. By adopting this failure criterion and using statistical data analysis, we proposed four analytical methods for predicting the bearing capacity of the piles from in-situ and laboratory tests, which are: cpt method based on tip resistance penetrometer (cpt test), mpt method based on pressuremeter limit pressure (test mpt), method of installation torque and analytical method based on the shear parameters of soil (triaxial tests and shear box). These methods take into account the geometry of the pile, the method and implementation of soil compaction. Performance analysis of the proposed methods showed that the analytical methods and cpt represent better the behavior of piles tested. An axisymmetric condition was assumed to model this geometry in two-dimensional space. In this study, we proposed to model the pipe screw pile with plates elements available in plaxis 2d. The helixes were modeled as circular disks. Interface elements were incorporated along the pile to simulate the soil-pile interaction. Hardening soil model was chosen to describe the soil with drained behavior was assigned for all layers. Linear elastic for pile and elastic plastic model based on the mohr-coulomb criterion was used to describe the interface behavior. The lateral expansion generated by the pile shaft was modeled by anisotropic volumetric strains (ɛxx=ɛzz, ɛyy=0). The pile behavior under tensile loading at different volumetric strains, it is clear that the best fit was obtained at volumetric strain of 40%. The parametric study also allowed us to establish the existence of a linear variation between the bearing capacity and spacings. The behavior of the galvanized steel in the ground has also been studied using three approaches such as: electrochemical, microscopic imaging and gravimetrically. Electrochemical tests of the corrosion of the zinc have been made in artificial soil solution into two periods, the rainy season and after eight months of contact soil-pile. Is a strong dependence of the observed corrosion rate of the zinc at the ph and conductivity of the solution. The corrosion rate is higher in the rainy season compared to eight months of contact of the pile with soil. High sulfate concentrations increase the rate of corrosion. The meb analysis shows that the fluctuation zone of the water table is the most corroded area. Comparison between the different methods of evaluating the corrosion rate showed that the ground water may be used as a representative profile of the chemical environment of a non-cohesive soil and slightly granular.

http://www.theses.fr/2014AGUY0790/document

Éditeur(s) : HAL CCSD Springer Verlag (Germany)
Résumé : International audience
The Michaelis-Menten enzymatic reaction is sufficient to perceive many subtleties of network modeling, including the concentration and time scales separations, the formal equivalence between bulk phase and single-molecule approaches, or the relationships between single-cycle transient probabilities and steady state rates. Seven methods proposed by different authors and yielding the same famous Michaelis-Menten equation, are selected here to illustrate the kinetic and probabilistic use of rate constants and to review basic techniques for handling them. Finally, the general rate of an ordered multistep reaction, of which the Michaelis-Menten reaction is a particular case, is deduced from a Markovian approach.
Journal of Mathematical Chemistry

hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806
https://hal-univ-rennes1.archives-ouvertes.fr/hal-00920806/document
ARXIV : 1312.5468
DOI : 10.1007/s10910-013-0237-5

Éditeur(s) : HAL CCSD Elsevier
Résumé : We investigate experimentally the alteration of fractured class-G cement flowed by CO2-rich brine. The experiment mimics a mechanically damaged rough-walled fractured cement annulus at temperature 60 °C and pressure 10 MPa. The experiment consists of flowing a reservoir-equilibrated brine mixed with CO2 (partial pressure of 2.3 MPa) through the fracture of average aperture 14 μm at constant flow rate (100 μL min−1). This flow rate corresponds to pressure gradient representative of an average in situ hydrodynamic condition. Results indicate an intense alteration of the cement with a large removal of mass at the scale of the sample. However, the fracture alteration patterns are triggered by the initial heterogeneity of the fracture aperture; the aperture of the low aperture zones tends to decrease due to calcite precipitation whereas preferential paths develop in the zones of higher aperture associated. Nevertheless, the expected large permeability increase triggered by the mass removal is mitigated by the precipitation of a low density Si-rich amorphous material. The alteration rate will decrease with time because of the increasing distance of diffusion between the fracture where the reactants are actively renewed by advection and the portlandite and C-S-H dissolution fronts. The different zones of reaction can be adequately modeled by a simple 1D diffusion-reaction model using published kinetics coefficients and extrapolation to larger times than the experiment time can be drawn. Altogether, and in addition to the previous studies of the alteration of fractured well cement annulus, this study shows that the leakage potential is strongly controlled by the initial distribution of the aperture along the fracture: low aperture zones will tend to self-heal while localized flow in connected high aperture paths will be perennial.
ISSN: 1750-5836

hal-01346006
https://hal.archives-ouvertes.fr/hal-01346006
DOI : 10.1016/j.ijggc.2016.01.032

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Diverse, abundant and usually well-preserved communities of skeletal organisms occur in the lower Pleistocene (Gelasian) siliciclastic deposits of the Greek island of Rhodes. Benthic foraminifers, molluscs and bryozoans have been studied in four measured and sampled sections located in the northern part of the island. Among these bottom-dwelling organisms, numerous extant taxa are good environmental indicators and, combined with field observations and sedimentological data, they provide information on the probable conditions in which they developed. The siliciclastic deposits of the Kritika Formation have been divided into 14 different bio- and lithofacies, which have been further grouped into four facies associations corresponding to four different environmental settings: (1) continental to fluviatile; (2) brackish-water (lagoonal/deltaic); (3) infralittoral (0–20 m); and (4) upper circalittoral (depths of 20–40 m, but also down to c. 50–60 m). Among the marine facies associations, several characteristic biocoenoses have been recognized: soft-bottoms (fine to coarse sands and gravels); seagrass meadows; biogenic calcareous crusts on drowned beachrock slabs; red algal rhodoliths; and bivalve shell beds. In the studied sections, 13 superimposed genetic sequences have been documented. The repetition of similar facies associations within each sequence suggests: (1) a possibly eustasy-controlled, cyclic sedimentation; (2) a general subsidence of Rhodes during the deposition of the studied facies associations; and (3) a mostly constant range of environmental conditions (i.e. sedimentation rates and temperature) throughout the Gelasian.
ISSN: 0016-7568

hal-01277829
https://hal.archives-ouvertes.fr/hal-01277829
DOI : 10.1017/S0016756815000230

Éditeur(s) : HAL CCSD Public Library of Science
Résumé : 51 pages; 15figures; 3 tables, accepted for publication in PloS ONE
International audience
We present a study about AFM imaging of living, moving or self-immobilized, bacteria in their genuine physiological liquid medium. No external immobilization protocol, neither chemical nor mechanical, was needed. For the first time, the native gliding movements of Gram-negative Nostoc cyanobacteria upon the surface, at speeds up to 900microns/h, were studied by AFM. This was possible thanks to an improved combination of a gentle sample preparation process and an AFM procedure based on fast and complete force-distance curves made at every pixel, drastically reducing lateral forces. No limitation in spatial resolution or imaging rate was detected. Gram-positive and non-motile R. wratislaviensis bacteria were studied as well. From the approach curves, Young modulus and turgor pressure were measured for both strains at different gliding speeds and are ranging from 20±3 to 105±5MPa and 40±5 to 310±30kPa depending on the bacterium and the gliding speed. For Nostoc, spatially limited zones with higher values of stiffness were observed. The related spatial period is much higher than the mean length of Nostoc nodules. This was explained by an inhomogeneous mechanical activation of nodules in the Nostoc. We also observed the presence of a soft extra cellular matrix (ECM) around the Nostoc. Both strains left a track of polymeric slime with variable thicknesses. For R. wratislaviensis, it is equal to few hundreds of nanometers, likely to promote its adhesion to the sample. While gliding, the Nostoc secretes a slime layer the thickness of which is in the nanometer range and increases with the gliding speed.
ISSN: 1932-6203

hal-00769765
https://hal.archives-ouvertes.fr/hal-00769765
https://hal.archives-ouvertes.fr/hal-00769765v3/document
https://hal.archives-ouvertes.fr/hal-00769765/file/REsubmission_In-situ_determination_Dhahri_Plos_One_R2_Hal.pdf

Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
We combine surface structural measurements, subsurface seismic imaging, and magneto-stratigraphic dating to retrieve, through geometric modeling, the detailed history of fold growth and sedimentation across the Huerguosi anticline, on the northern Tianshan piedmont, taking advantage of a beautifully exposed section of growth strata. The model assumes a fault-bend folding mechanism, consistent with subsurface fold geometry. The shortening history is obtained by least-squares fitting of the measured dip angles of the growth strata. The shortening rate across the anticline is shown to have been remarkably constant: it increased only slightly from 0.84 ± 0.04 mm/yr between 10 and 4 Ma to 1.14 ± 0.02 mm/yr over the past 4 m.y. This approach also allows correcting syntectonic sedimentation rates for the effect of the fold growth and shows that the sedimentation rates in the piggyback basin increased abruptly from ~0.4 to ~0.7 mm/yr ca. 4 Ma.
ISSN: 0091-7613

insu-00338254
https://hal-insu.archives-ouvertes.fr/insu-00338254
DOI : 10.1130/G25073A.1

Éditeur(s) : HAL CCSD American Geophysical Union (AGU) American Geophysical Union
Résumé : International audience
The brittle to ductile transition may strongly influence hydraulic properties of rocks at the depth and temperature ranges that hydrothermal fluids circulate. To examine this transition in the context of the oceanic crust, we conducted a series of deformation experiments on a natural basalt sample at in situ oceanic crust conditions. Dilatancy was measured during deformation. The method consisted in monitoring the volume of pore fluid that flows into or out of the sample at constant pore pressure. Mechanical and microstructural observations at experimental constant strain rate of 10−5 s−1 indicated that the basalt was brittle and dilatant up to 800°C. At higher temperature, the deformation mode became macroscopically ductile and samples compacted. These observations have important implications on heat transfer and fluid migration in oceanic crust.
ISSN: 0094-8276

hal-01172352
https://hal.archives-ouvertes.fr/hal-01172352
DOI : 10.1002/2015GL063437

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
Torsion experiments (inline image =3 × 10−4 s−1) were performed to investigate the large strain (γmax = 15) rheology on quartz-muscovite aggregate as analogue to pelitic rocks undergoing melting and crystallization during deformation at 300 MPa confining pressure and 750°C temperature. Microstructures reveal four distinct but gradational stages of crystal-melt interactions during deformation--(a) solid state deformation, (b) initiation and domination of partial melting, (c) simultaneous partial melting and crystallization, and (d) domination of crystallization. The microstructural stages are linked to the rheology of the deforming samples. Partial melting starts at relatively low finite shear strains (γ = 1-3) showing approximately 60% strain softening. At γ = 4-10 the partially molten bulk material shows a steady state flow at low stress. Further crystallization of new crystals at the expense of melt between γ = 10 and 15 causes weak strain hardening until the material fails by developing brittle fractures. The stress exponent (n), calculated at γ = 1, 5, and 10, increases from ∼ 3 to ∼ 43, indicating a transition from power to power law breakdown or exponential flow of the bulk system. Hydrostatic experiments for equivalent times and conditions of the torsion experiments were also conducted to evaluate the reaction kinetics and microstructures under static conditions. The new experimental data establish that partially molten rock does not flow according to a constant strain rate-dependent power law (steady state) rheology. The rheological transition from strain rate sensitive to strain rate insensitive flow is interpreted as a function of melt-crystal ratio, their mutual interactions, and the evolution of microstructures in the partially molten rock.
ISSN: 0148-0227

hal-01053709
https://hal.archives-ouvertes.fr/hal-01053709
DOI : 10.1002/2013JB010777

Éditeur(s) : HAL CCSD
Résumé : International audience
Extreme rainfall events can trigger numerous landslides in mountainous areas and a prolonged increase of river sediment load. The resulting mass transfer at the Earth surface in turn induces stress changes at depth, which could be sufficient to trigger shallow earthquakes. The 2009 Morakot typhoon represents a good case study as it delivered 3 m of precipitation in 3 days and caused some of the most intense erosion ever recorded. Analysis of seismicity time-series before and after the Morakot typhoon reveals a systematic increase of shallow (i.e. 0-15 km of depth) earthquake frequency in the vicinity of the areas displaying a high spatial density of landslides. This step-like increase in frequency lasts for at least 2-3 years and does not follow an Omori-type aftershock sequence. Rather, it is associated to a step change of the Gutenberg-Richter b-value of the earthquake catalog. Both changes occurred in mountainous areas of southwest Taiwan, where typhoon Morakot caused extensive landsliding. These spatial and temporal correlations strongly suggest a causal relationship between the Morakot-triggered landslides and the increase of earthquake frequency and their associated b-value. We propose that the progressive removal of landslide materials from the steep mountain landscape by river sediment transport acts as an approximately constant increase of the stress rate with respect to pre-typhoon conditions, and that this in turn causes a step-wise increase in earthquake frequency. To test this hypothesis, we investigate the response of a rate-and-state fault to stress changes using a 2-D continuum elasto-dynamic model. Consistent with the results of Ader et al. (2013), our preliminary results show a step-like increase of earthquake frequency in response to a step-like decrease of the fault normal stress. We also investigate the sensitivity of the amplitude and time-scale of the earthquake frequency increase to the amplitude of the normal stress change and to rheological parameters. Our study offers new insights on the potential influence of extreme erosional events on the short-time scale dynamics of faults and earthquakes.
American Geophysical Union Fall Meeting 2016
San Francisco, United States

insu-01416987
https://hal-insu.archives-ouvertes.fr/insu-01416987

Éditeur(s) : HAL CCSD
Résumé : The main purpose of this thesis was to characterize and to model the hydrodynamic and thermochemical processes leading to the alteration of the wellbore cement materials under borehole conditions. Percolation experiments were performed on fractured cement samples under CO2 storage conditions (60°C and 10MPa). Injection flow rate was dictated by the fracture aperture of each sample. CO2 enriched brine was flowed along the fracture aperture, and permeability changes as well as chemical evolution of major cations were continuously acquired during the experiment time. Reaction paths developed by the alteration of the cement were characterized using microtomography and ESEM images. The experiments conducted using samples presenting large fracture apertures during 5h showed that permeability was maintained constant during the experiment time. Three reacted layers were displaying by the alteration of portlandite and CSH. Long term experiment (26h) conducted with large initial fracture aperture showed a decrease of the permeability after 15hours of CO2 exposure. Otherwise, experiments performed on samples presenting narrow apertures indicated the conversion of portlandite and CSH to calcite leading to the permeability reduction and the fracture clogging. Assemblages of phases and chemical changes were modelled using GEMS-PSI speciation code. We studied also using a coupled transport-reactive model the conditions leading to the cement alteration and the formation of associated layers.
L'objectif de cette thèse était de modéliser à partir des expériences de percolation-réactive, les processus hydrodynamique et réactionnel qui gouvernent l'altération des ciments de puits. Différentes expériences ont été réalisées dans des conditions représentatives de celles du stockage du CO2. Des échantillons fracturés ont été utilisés pour injecter une saumure enrichie en CO2 à 60°C et 10MPa et à différentes pressions partielles de CO2. Le débitd'injection variait en fonction des propriétés hydrauliques de l'échantillon exposé. L'injection d'une saumure enrichie en CO2 à débit constant à travers une fracture supposée plane a permis d'étudier les modifications des propriétés hydrodynamiques et ces conséquences sur la géochimie et la microstructure du ciment altéré. L'impact dynamique de l'évolution microstructurale a été mis en évidence. Les expériences conduites sur des échantillons présentant de larges ouvertures, réalisées sur une durée de 5 h, ont montré que la perméabilité était maintenue constante le long de l'expérience. Trois couches d'altération se sont développées consécutivement à la dissolution de la portlandite et la décalcification des CSH. L'altération a entrainé la précipitation des carbonates et de la silice amorphe à proximité de la fracture. Dans le cas d'une expérience longue durée appliquant les mêmes conditions que précédemment on a observé que la croissance de la silice amorphe a entrainé la diminution de la perméabilité. Par ailleurs les expériences effectuées sur des échantillons présentant de faibles ouvertures, ont indiqué que la conversion de la portlandite en calcite conduit au colmatage de la fracture. L'évolution des assemblages de phases conduisant à la formation des carbonates et de la silice amorphe a été modélisée à partir du code géochimique GEMS. Les mécanismes de diffusion et les processus de mise en place des couches d'altération ont été étudiés à partir d'un modèle analytique et d'un modèle de transport réactif à partir du code géochimique PHREEQC.
https://tel.archives-ouvertes.fr/tel-01038034

tel-01038034
https://tel.archives-ouvertes.fr/tel-01038034
https://tel.archives-ouvertes.fr/tel-01038034/document
https://tel.archives-ouvertes.fr/tel-01038034/file/theseabdoulghafour.pdf

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Carbonation of peridotite is a widespread process in nature, with emerging societal and environmental implications through geological storage of CO2. We studied the micro- and nano-scale structures associated with the carbonation of peridotite pervaded by a CO2-rich water and the induced changes of its hydrodynamic properties. Focused ion beam (FIB) nanotomography was coupled with scanning electron microscopy (SEM) and transmission electron microscopy (TEM) observations. An experimental sample of dunite core percolated by a CO2-rich fluid (pCO2 = 11 MPa) at 160 °C was compared with a naturally carbonated sample from the Atlantic Ridge (Exp. IODP 304). Results of the 8-days percolation experiment show continuous alteration of olivine into magnesite locally associated with a poorly crystalline serpentine-type mineral referred to as proto-serpentine. The experiment is also characterized by an overall decrease in rock porosity (from 7.7 to 6.4%) and permeability (from 8.5 × 10− 16 to 1.7 × 10− 16 m2). The primary inter-granular porosity (1 to 10 μm) is progressively filled with magnesite, leading to the overall decrease of permeability. At the same time, a secondary small-scale porosity (10 nm to 1 μm) is created at the tip of the dissolution features along the (010) cleavage planes of olivine grains. Carbonate crystals grow within these etch-pit structures behind the dissolution front. Dissolution and precipitation occur at a relative rate that maintains the secondary porosity over the timescale of the experiment (i.e. carbonate growth has to be the slowest one). This process is interpreted as an interface coupled dissolution-precipitation mechanism of olivine carbonation. Proto-serpentine is only formed in highly reduced flow areas, such as small olivine etch-pits (10 to 500 nm wide), which are more isolated from CO2 input. SEM-FIB analyses show the 3D preferential orientation of the dissolution-precipitation planes within a given olivine grain. It suggests the formation of lateral connections between the etch-pits (infra-micrometric “channels”) providing access to reactants and removing reaction products at the reaction sites. The experimental results show that olivine dissolution and magnesite precipitation converge to a quasi-steady state resulting in a constant carbonation rate controlled by reaction kinetics and not by mass transfer for this flow regime. The system self-regulates, independently of the porosity change at least during this incipient stage of olivine carbonation. Similar textures are observed in natural samples collected at 170 m-depth in the vicinity of veinlets driving late fluids down into the cooling oceanic lithosphere. This suggests that similar mechanisms are active in nature and can play an important role in the late, low temperature alteration stages of fractured peridotite. These results also highlight the critical role of nm-scale spatial arrangement of dissolution and precipitation features on mass transfers and on the sustainability of olivine carbonation through coupled dissolution-precipitation processes.
ISSN: 0009-2541

hal-01684733
https://hal.archives-ouvertes.fr/hal-01684733
DOI : 10.1016/j.chemgeo.2017.11.013

Éditeur(s) : HAL CCSD American Geophysical Union
Résumé : International audience
We examine absolute gravity (AG) and vertical Global Positioning System (GPS) time series between 1995 and 2010 at eight collocated sites in mid-continent North America. The comparison of AG and GPS rates aligned to ITRF2005 yields a gravity/uplift ratio of -0.17 +/- 0.01 mu Gal mm(-1) (1 mu Gal = 10 nm s(-2)) and an intercept of -0.1 +/- 0.5 mm yr(-1). In contrast, aligning the GPS velocities to ITRF2000 results in a gravity/uplift intercept of -1.3 +/- 0.5 mm yr(-1). The near-zero gravity/uplift offset for the ITRF2005 (or ITRF2008) results shows a good alignment of the GPS vertical velocities to Earth's center of mass, and confirms that GPS velocities in this reference frame can be compared to predictions of geodynamic processes such as glacial isostatic adjustment (GIA) or sea-level rise. The observed gravity/uplift ratio is consistent with GIA model predictions. The ratio remains constant in regions of fast and slow uplift, indicating that GIA is the primary driving process and that additional processes such as local hydrology have a limited impact on a decadal time-scale. Combining AG and GPS measurements can provide significant constraints for geodetic, geodynamic, and hydrological studies. Citation: Mazzotti, S., A. Lambert, J. Henton, T. S. James, and N. Courtier (2011), Absolute gravity calibration of GPS velocities and glacial isostatic adjustment in mid-continent North America, Geophys. Res. Lett., 38, L24311, doi:10.1029/2011GL049846.
ISSN: 0094-8276

hal-00689010
https://hal.archives-ouvertes.fr/hal-00689010
DOI : 10.1029/2011GL049846

Éditeur(s) : HAL CCSD
Résumé : The Manche-à-Eau lagoon, brackish water ecosystem is subject to tide, trade winds and hurricanes. The 2004 map (IGN) is covered of a 90 m aside square, to place 37 spots in a GIS and to limit them on the field with a GPS. From aerial photos, the outlines drawing allows morphological follow up since 1950. Depth is measured at 1437 spots with bathymetric perch and prob. Stream direction is established during stream and ebb tide using ribbon fixed to the spot and a compass. Water volumes at low and high tide allow calculating the water renewal rate, at each tide. The mapping follow-up shows outlines and island stabilization because of the “shield effect” and soil (root peat), small islands aggregation/disaggregation depending of hurricanes passing. The present bathymetry shows the lagoon filling and the channels digging. General streams are subject to trade-winds (SSE-NNW) andthe tide movement to and fro. The up and down water generates a stream channel situated along the outlines and around dips and sandbanks. Water renewal volume (14.8 %) at each tide, combined with an active and various hydrodynamism tends to improve the water quality in this system.
Evolución Morfológica de la Laguna del Manglar Manche-à-EAU (Guadalupe, Antilles Francesas) de 1950 a 2004, y su batimetría eb 2007La laguna del Manche-à-Eau, ecosistema de agua salobre está sometido a la marea, a los alisios y a los huracanes. El mapa IGN de 2004 está dividido según una malla de 90 m para colocar 37 puntos en un SIG y limitarlos in situ con un GPS. Según las fotografías aéreas, el dibujo de los contornos hace posible el seguimiento morfológico desde 1950. La profundidad se mide en 1437 puntos con una pértiga y una sonda batimétrica. La orientación de las corrientes se establece en el mar y en el reflujo con catavientos fijados en los puntos, y una brújula. Las masas de agua entrantes y salientes permiten el cálculo del volumen de agua renovado durante cada marea. El seguimiento cartográfico muestra una estabilización de los contornos y de la isla debido al “efecto de escudo” y al suelo (turba de raíz), y una agregación/desagregación de los islotes según el paso de los huracanes. De acuerdo a la batimetría actual, se constatan el relleno de la laguna y la excavación de los canales. Las corrientes generales son controladas en superficie por los alisios, vientos de SSE-NNO y por el vaivén de la marea. Los movimientos ascendentes y descendentes de agua generan corrientes profundas a lo largo de los bordes y alrededor de depresiones y bajos. El volumen de agua renovado durante cada marea (14,8%) combinado al hidrodinamismo activo y variado tiende a vivificar este ecosistema.
La lagune de la Manche-à-Eau, écosystème d’eau saumâtre est soumis à la marée, aux alizés et aux ouragans. La carte IGN de 2004 est quadrillée selon une maille de 90 m pour placer 37 points dans un SIG et les borner sur le terrain avec un GPS. D’après les photographies aériennes, le dessin des contours rend possible le suivi morphologique depuis 1950. La profondeur est mesurée à 1437 points avec une perche et une sonde bathymétrique. L’orientation des courants est établie au flot et au jusant avec des penons fixés aux points, et une boussole. Les masses d’eau entrantes et sortantes permettent le calcul du volume d’eau renouvelé à chaque marée. Le suivi cartographique montre, une stabilisation des contours et de l’île due à « l’effet bouclier » et au sol (tourbe racinaire), et une agrégation/désagrégation des îlots selon le passage des ouragans. D’après la bathymétrie actuelle, le comblement de la lagune et le creusement des chenaux sont constatés. Les courants généraux sont gouvernés en surface par les alizés, vent de SSE-NNO et par le va-et-vient de la marée. Les descentes et remontées d’eau obligent ceux-ci à emprunter en profondeur les passages situés le long des berges et autour des dépressions et des hauts-fonds. Le volume d’eau renouvelé à chaque marée (14,8 %) combiné à l’hydrodynamisme actif et varié tend à vivifier cet écosystème.
Proceedings of the 61st Gulf and Caribbean fisheries institute
Le Gosier, Guadeloupe, France

hal-01600092
https://hal.archives-ouvertes.fr/hal-01600092
PRODINRA : 384819

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Interactions between deformation and melt percolation yield important consequences for the evolution of the mantle lithosphere, controlling its composition and mechanical behavior. In the Lherz massif (Pyrenees, France), the analysis of structural relationships between harzburgites, lherzolites and pyroxenites and of the crystal-preferred orientations (CPO) of olivine and pyroxenes highlights a strong feedback between percolation of basaltic melts and deformation under near-solidus conditions at the lithosphere–asthenosphere boundary. Elongated harzburgite bodies up to tens of meters wide, which are the remnants of an old lithospheric mantle, preserve a constant foliation. This foliation is locally outlined by cm-scale flattened websteritic lenses. At the contact with the enclosing lherzolites, the harzburgite foliation is crosscut by the lherzolites foliation and by cm-wide websterite bands parallel to the contact. Strain intensity in the lherzolites increases with distance to the harzburgites. Based on these observations, we propose that reactive percolation was synchronous to the deformation and propose that variations in instantaneous melt fraction, due to pyroxenes and spinel crystallization during reactive melt transport, guided strain localization. Accordingly, the observed decrease in olivine CPO intensity and change in CPO patterns from harzburgites to distal lherzolites are interpreted as recording changes in the relative contribution of dislocation glide and diffusion processes, which is ruled by a balance between the instantaneous melt fraction and the local strain rate. We also propose that the pervasive websteritic layering in the refertilized lherzolites may result from deformation-assisted melt segregation in a system with decreasing permeability due to refertilization reactions. Finally, we discuss the possible timing and geodynamical context of the refertilization episode.
ISSN: 0012-821X

hal-00411724
https://hal.archives-ouvertes.fr/hal-00411724
DOI : 10.1016/j.epsl.2008.07.053

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The present study aims at better deciphering the different mechanisms involved in the functioning of the subduction interplate. A 2D thermo-mechanical model is used to simulate a subduction channel, made of oceanic crust, free to evolve. Convergence at constant rate is imposed under a 100 km thick upper plate. Pseudo-brittle and non-Newtonian behaviours are modelled. The influence of the subduction channel strength, parameterized by the difference in activation energy between crust and mantle () is investigated to examine in detail the variations in depth of the subduction plane down-dip extent, . First, simulations show that numerical resolution may be responsible for an artificial and significant shallowing of if the weak crustal layer is not correctly resolved. Second, if the age of the subducting plate is 100 Myr, subduction occurs for any . The stiffer the crust is, that is, the lower is, the shallower is (60 km depth if kJ/mol) and the hotter the fore-arc base is. Conversely, imposing a very weak subduction channel ( J/mol) leads there to an extreme mantle wedge cooling and inhibits mantle melting in wet conditions. Partial kinematic coupling at the fore-arc base occurs if kJ/mol. If the incoming plate is 20 Myr old, subduction can occur under the conditions that the crust is either stiff and denser than the mantle, or weak and buoyant. In the latter condition, cold crust plumes rise from the subduction channel and ascend through the upper lithosphere, triggering (1) partial kinematic coupling under the fore-arc, (2) fore-arc lithosphere cooling, and (3) partial or complete hindrance of wet mantle melting. then ranges from 50 to more than 250 km depth and is time-dependent if crust plumes form. Finally, subduction plane dynamics is intimately linked to the regime of subduction-induced corner flow. Two different intervals of are underlined: 80–120 kJ/mol to reproduce the range of slab surface temperature inferred from geothermometry, and 10–40 kJ/mol to reproduce the shallow hot mantle wedge core inferred from conditions of last equilibration of near-primary arc magmas and seismic tomographies. Therefore, an extra process controlling mantle wedge dynamics is needed to satisfy simultaneously the aforementioned observations. A mantle viscosity reduction, by a factor 4–20, caused by metasomatism in the mantle wedge is proposed. From these results, I conclude that the subduction channel down-dip extent, , should depend on the subduction setting, to be consistent with the observed variability of sub-arc depths of the subducting plate surface.
ISSN: 0031-9201

hal-01623155
https://hal.archives-ouvertes.fr/hal-01623155
DOI : 10.1016/j.pepi.2017.05.008

Résumé : La forte variabilité de la vitesse du vent fait que l'énergie produite par un parc éolien n'est pas constante dans le temps. Le gestionnaire ne peut donc pas dimensionner son réseau électrique en prenant intégralement ce type de production en compte. L' une des solutions préconisées pour permettre le développement de l' éolien et son intégration avec une plus grande sureté aux réseaux, est de développer et d'améliorer les outils de prévisions. Le travail de thèse consiste à améliorer les performances d'un outil de prédiction basé sur les réseaux de neurones bayesiens, permettant la prédiction de la puissance à très court terme . Le prédicteur fonctionne notamment par J'ajustement de paramètres, certain se détermine « automatiquement » via le mécanisme des réseaux de neurones bayesiens d' autres, que nous nommerons paramètres temporels, sont à l' appréciation de l'utilisateur. Le travail mené consiste à établir un protocole pour la fixation de ces paramètres tout en améliorant les performances du prédicteur . Nous avons donc décidé de conditionner leurs valeurs en fonction de la variabilité des séquences de puissance précédent l'instant de prévision. Tout d'abord nous avons classifié des séquences de puissance en fonction de leurs coefficients de variation en appliquant la méthode des C-moyennes floues. Puis, chaque classe formée a été testée sur plusieurs valeurs de paramètres, les valeurs associées aux meilleures prédictions ont été retenues. Enfin, ces résultats couplés au formalisme des Chaines de Markov, par le biais de la matrice de transition , ont perm is d'obtenir des taux d'amélioration par rapport à la persistance allant de 7,73 à 23,22 % selon l'horizon de prédiction considéré
The high variability of the wind speed has for conse quences that the energy produced by a wind farm is not constant over time. Therefore, the manager can't size the electrical network by takin g into account this type of production. One solution advocated for the development of wind energy and its integrati on with greater security at network, is to develop and improve fore casting tools. The thesi s objective is to improve the performance of a predi ction tool based on Bayesian neural networks, allowing the predi ction of wind power for short timescales. The predictor works, in part icular by the adjustment of parameters, sorne is determined "automatically" through the mechan ism of neural networks Bayesian other , which we cali temporal parameters are at the discretion of the user. The work involves establishing a protocol for the determination of these parameters and improving the performance of the predictor. So, we decided to condition their values depending on the sequence variability of wind power previous the moment of the forecast. First we classified sequences of power according to their coefficients of variation using the method of fuzzy C-means. Then, each formed class was tested for several parameters values, the values associated with the best predictions were selected. Finally , these result s coupled with the formalism of Markov chains , through the transition matrix allowed to obtain rates of improvement over the persistence ranging from 7.73 to 23.22 % depending on the prediction horizon considered

http://www.theses.fr/2013AGUY0679/document