Éditeur(s) : HAL CCSD Geological Society of America
Résumé : International audience
On the New Jersey shelf (offshore North America), the presence of pore water fresher than seawater is known from a series of boreholes completed during the 1970s and 1980s. To account for this fresh water, a fi rst hypothesis involves possible present-day active dynamic connections with onshore aquifers, while a second involves meteoritic and/or sub- ice-sheet waters during periods of lowered sea level. Expedition 313 drilled three boreholes on the middle shelf, offering a unique opportunity for the internal structure of the siliciclastic system to be accessed, at scales ranging from the depositional matrix to the continental margin. This enables the stratigraphic architecture to be correlated with the spatial distribution and salinity of saturating fl uids. Expedition 313 revealed both very low salinities (<3 g/L) at depths exceeding 400 m below the seafl oor and evidence for a multilayered reservoir organization, with freshand/ or brackish-water intervals alternating vertically with salty intervals. In this study we present a revised distribution of the salinity beneath the middle shelf. Our observations suggest that the processes controlling salinity are strongly infl uenced by lithology, porosity, and permeability. Saltier pore waters generally occur in coarse-grained intervals and fresher pore waters occur in fi ne-grained intervals. The transition from fresher to saltier intervals is often marked by cemented horizons that probably act as permeability barriers. In the lowermost parts of two holes, the salinity varies independently of lithology, suggesting different mechanisms and/or sources of salinity. We present an interpretation of the sedimentary facies distribution, derived from core, logs, and seismic profi le analyses, that is used to discuss the marginscale two-dimensional reservoir geometry and permeability distribution. These proposed geometries are of primary importance when considering the possible pathways and emplacement mechanisms for the fresh and salty water below the New Jersey shelf.
EISSN: 1553-040X

insu-00858241
https://hal-insu.archives-ouvertes.fr/insu-00858241
DOI : 10.1130/GES00855.1

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Abstract View references (38)Silicalite-1 (S-1) and ZSM-5 membranes prepared by secondary growth on tubular ceramic supports were tested using a pervaporation set up for the desalination of aqueous solutions containing NaCl in concentrations corresponding to brackish (0.3-1wt%), sea (3.5wt%) and brine (7.5-15wt%) water. ZSM-5 membranes delivered higher water fluxes when compared with S-1 membranes due to enhanced hydrophilicity of the Al-rich zeolite structure leading to fluxes as high as 11.5kgm -2h -1 for 0.3wt% NaCl feed solutions at 75°C. At higher salt concentration the water flux decreased alongside with the salt rejection rate, however the hydrophilic ZMS-5 membrane became more susceptible to performance loss, particularly at high temperatures. Detailed stability experiments carried out for up to 560h showed the dissolution of both S-1 and ZSM-5 top layers. This was attributed to the combined effects of ion exchange and water dissolution mechanisms. Interesting though, the MFI structure zeolite was still observed on the XRD patterns whilst EDX depth profile showed the presence of silica up to 30μm depth into the support. These results suggest the formation/infiltration of a compact amorphous phase in the substrate, derived from the aggregation of the dissolved silicate species and possibly together with the arrangement of MFI nano-slabs during the desalination tests. Despite generating lower water fluxes, the S-1 membrane exhibited relatively high robustness under the long term testing conditions which included temperature cycling, delivering salt rejections from initial >99% to <80% at the end of the testing period (560h). © 2012 Elsevier B.V.
ISSN: 0376-7388

hal-01683201
https://hal.univ-antilles.fr/hal-01683201
DOI : 10.1016/j.memsci.2012.05.074

Éditeur(s) : Université de Pau et des Pays de l'Adour
Résumé : In a context of decline of European eel (Anguilla anguilla L.) and search for biological markers of habitat use and quality, a multidisciplinary approach was engaged on the Adour estuary and its associated wetlands. Two axes were developed. The first axe aimed at highlighting the successive presence of the species in different ecosystems based on the otolith elemental composition. The second aimed at the evaluation of the chemical pressure underwent by eels based on the contaminant bioconcentration in soft tissues and the early molecular response to the chemical stress. With a view to the analyses of otolith elemental composition taking into account the 3D structure, the low elemental concentration in the matrix and keeping the finest spatial resolution, four micro sampling strategies and multi elemental analyses using femtosecond laser ablation ICP-MS were tested (crater, 1D scan, 2D scan, flash ablation). The strategy showing the best compromise according to the objectives (continuous recording, multi elemental approach) was applied on otolith of yellow eels from the Adour. The simultaneous use of Sr and Ba profiles, after validation, represents a new tool, easy, fast and reliable for the reconstruction of freshwater and brackish ecosystems use by eel avoiding misinterpretation due to vaterite inclusions. Three major behaviors were highlighted on the Adour: a residency in brackish water, a residency in freshwater and nomad behavior. The last one is illustrated by a shift to brackish water after three to four years spent in freshwater. Simultaneously, the study of inorganic and organic contamination of eel soft tissues showed that sampled wetlands are moderately contaminated. These results were confirmed by the first estimation, in wild conditions, of the early response to the chemical stress using the hepatic expression of CYP1A1 gene measured by real time RT-PCR. Conversely, in the downstream part of the Adour estuary, Hg loads in eels, especially methyl mercury, and PCBs analyses indicate values that need further investigations considering the European norms of consumption. The comparison of the different markers used (heavy metal and organochlorinated compounds contamination of soft tissues, condition index) support a lower quality of the estuary despite higher eel growth rate on this site. This study supports the use of numerous markers in integrated studies in order to understand and specify the relationships between eels and their continental growth zones.
Dans un contexte de déclin de l'anguille européenne (Anguilla anguilla L.) et de recherche de marqueurs biologiques retraçant la fréquentation des divers habitats et renseignant sur la qualité de ceux-ci, une approche pluridisciplinaire a été mise en place sur l'estuaire de l'Adour et ses zones humides. Deux axes ont été privilégiés. Le premier cherchait à visualiser la présence successive de l'espèce dans différents écosystèmes en se basant sur la composition élémentaire des otolithes. Le deuxième avait pour but d'évaluer la pression chimique inorganique et organique subie par l'anguille dans les zones d'études en s'appuyant sur la bioconcentration des contaminants dans les tissus mous et la réponse moléculaire précoce au stress chimique. En vue des analyses de la composition élémentaire des otolithes et pour répondre au mieux à la structure en trois dimensions, à la faible concentration des éléments dans la matrice tout en conservant une résolution spatiale la plus fine possible, quatre stratégies de micro-échantillonnage et d'analyses multiélémentaires par ablation laser femtoseconde ICP-MS ont été testées (cratère, scan 1D, scan 2D, ablation flash). La méthodologie présentant le meilleur compromis par rapport aux objectifs fixés (enregistrement continu, approche multiélémentaire) a ensuite été appliquée sur les otolithes d'anguilles jaunes du Bas-Adour. L'utilisation simultanée des profils continus de Sr et de Ba, après validation, constitue un outil facile d'utilisation, rapide et fiable pour reconstruire les historiques de fréquentation des différents écosystèmes estuariens et dulçaquicoles par l'anguille tout en s'affranchissant des problèmes potentiels liés aux inclusions de vatérite, un polymorphe du carbonate de calcium. Trois grands types de comportement ont pu être mis en évidence sur l'Adour : résidence en eau saumâtre, résidence en eau douce et nomadisme. Ce dernier est plus particulièrement illustré par un mouvement marqué vers l'eau saumâtre pour des individus ayant passé de trois à quatre ans dans l'eau douce. Parallèlement, l'étude de la contamination organique et inorganique des tissus mous de l'anguille a permis de déduire à la faible contamination des zones humides échantillonnées. La première estimation en condition naturelle de la réponse précoce au stress chimique par évaluation de l'expression hépatique du gène CYP1A1 par RT-PCR en temps réel confirme ces résultats. En revanche, dans la partie estuarienne aval de l'Adour, les niveaux en Hg, présent en majorité sous sa forme méthylée dans les anguilles, et l'analyse des PCBs indiquent des valeurs qui suscitent un examen plus approfondi au regard des normes européennes en vigueur. La confrontation des différents descripteurs (contamination des tissus mous par les métaux lourds et organochlorés, indice de condition) utilisés conforte la qualité moindre de la zone estuarienne malgré des performances de croissance de l'anguille favorisées sur ces sites. Ainsi, cette étude supporte l'intérêt de la mise en oeuvre de descripteurs multiples utilisés (niveaux de métaux lourds et organochlorés dans les tissus mous, réponse moléculaire au stress chimique, microchimie de l'otolithe, indice de condition, taux de croissance) dans des approches intégrées pour comprendre et préciser les relations existantes entre l'anguille et ses zones de croissance continentales.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/2009/these-7381.pdf
http://archimer.ifremer.fr/doc/00000/7381/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Carbonised template silica membranes were synthesised and investigated for water desalination for brackish (0.3wt%), sea water (3.5wt%) and brine (7.5wt%) NaCl solutions at temperatures range from 22 to 60°C. The membranes were prepared by a two-step base catalysed sol-gel method using tetraethyl orthosilicate TEOS as the silica precursor and triblock copolymer of Pluronic® P123 as the templating agent. The P123 silica membranes calcined under vacuum only produced high quality membranes by the interlayer-free method. The membranes were stable during testing of up to 250h under different thermal and salt concentration solutions, always delivering very high salt rejections >99.5%. It was found that by increasing the template concentration in the silica matrix from 5 to 50wt%, salt concentration polarisation was greatly reduced. As such, high water fluxes were measured up to 8.5kgm-2h-1 for brackish water and 6.6kgm-2h-1 for brine water. © 2014 Elsevier B.V.
ISSN: 0376-7388

hal-01683210
https://hal.univ-antilles.fr/hal-01683210
DOI : 10.1016/j.memsci.2014.10.026

Éditeur(s) : HAL CCSD
Résumé : International audience
The functioning of the Manche-à-Eau lagoon and of its mangrove environment with the population of marine fish of Guadeloupe has been studied since 1983, and particularly in the 2000s. This ecosystem supports a stable fish assemblage structure because of its twice a day turnover (14.8%) of marine water. It is a favorable and important site for the reproduction (38%) and growth (46%) of a large number of species. The life cycle of these fish species share, for the most part, an ecophase in the mangrove in brackish water and a marine ecophase outside the lagoon. The mangrove plays a vital role in the retention of continental nutrients. This facilitates the trophic exploitation of vegetal and animal detritus bases by the fish in high population density. The majority of populations present individuals reaching length at least 40% from the known maximum length for the species, although only 38.1% have individuals longer than 300 mm. The mangrove aids in the spawning activity of fish species (41% to 58% of the total abundance) and in the reproductive (maturation, migration) process (58% in density and 70% in biomass). The sedentary species lay their eggs in the mangrove, whereas the temporary species stay there during their trophic ecophase or after a genesic migration from the sea to assure sexual maturation for both sexes in the species.
Proceedings of the 61st Gulf and Caribbean Fisheries Institute
Gosier, Guadeloupe

hal-00755780
https://hal.univ-antilles.fr/hal-00755780
https://hal.univ-antilles.fr/hal-00755780/document
https://hal.univ-antilles.fr/hal-00755780/file/GCFI_61_2009_307-312.pdf

Éditeur(s) : HAL CCSD Springer Verlag
Résumé : International audience
The New Jersey continental shelf extends 150 km off the shoreline. During IODP Expedition 313, siliciclastic deposits of late Eocene to late Pleistocene age were drilled down to 631, 669 and 755 m below seafloor at sites 27A, 28A and 29A respectively in very shallow waters (33.5 to 36 m depth). Pore water salinities display multilayered brackish-salty-brine units 10 to 170 m thick, where low-salinity water is preferentially stored in fine-grained sediments. The sharp boundaries of these buried aquifers are often marked by cemented layers a few centimetres thick. The mineralogy and scanning electron microscope observations of these layers show two phases of cementation by authigenic minerals: (1) the early carbonate cement is frequently associated with pyrite, and (2) the late silicate cement infills the residual porosity. The isotopic compositions of the carbonate cements vary widely: −2.4 < δ¹⁸O ‰ VPDB < +2.8; −15.1 < δ¹³C ‰ VPDB < +15.6. The δ¹⁸O values indicate that the carbonate cements precipitated with pore waters comprising variable mixtures of seawater and ¹⁸O-depleted fresh water originating from submarine groundwater discharge. The δ¹³C values of the carbonate cements are related to organic matter diagenesis, providing ¹³C-depleted dissolved inorganic carbon during bacterial sulphate reduction and anaerobic oxidation of methane, and ¹³C-rich dissolved inorganic carbon during methanogenesis. The diagenetic cementation processes included chemical weathering of reactive silicate minerals by the CO²-rich pore waters issued from organic matter diagenesis that released bicarbonate, cations and dissolved silica, which were further precipitated as carbonate and silicate cements. The estimated range of temperature (18±4 °C) during carbonate precipitation is consistent with carbonate cementation at moderate burial depths; however, silicate cementation occurred later during diagenesis at deeper burial depths.
ISSN: 0276-0460

hal-01559985
https://hal.archives-ouvertes.fr/hal-01559985
DOI : 10.1007/s00367-017-0506-6

Éditeur(s) : Actes de Aquaculture en milieu tropical
Résumé : An important part of global aquaculture production comes from countries situated in the tropical "belt". Aquaculture in these countries must undergo significant development in the coming decade. Progress in aquaculture development has been underway for the last ten years. High temperatures lead to rapid and continuous growth allowing for year-round production and utilisation of vast coastal areas with unexploited brackish water. Countries interested by this activity are by and large developing countries and the socio-economic conditions are favourable, with an abundant workforce, high local demand and the need create export markets.
L' aquaculture dans les pays de la "ceinture" tropicale représente une part importante de la production globale d'aquaculture dans le monde et doit connaître un développement très significatif dans la décennie à venir. Ce mouvement s'est amorcé dans les dix dernières années. En effet, les températures élevées entraînent des croissances rapides et continues, autorisent des productions toute l'année et permettent de valoriser de vastes étendues littorales d'eau saumâtre inutilisées. Les pays intéressés par cette activité sont en majorité en voie de développement et les conditions socio-économiques sont favorables, car il existe une main d'oeuvre abondante, une forte demande interne et le besoin de créer des marchés à l'exportation. [OCR NON CONTRÔLE]

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1984/acte-4403.pdf
http://archimer.ifremer.fr/doc/00000/4403/

Éditeur(s) : HAL CCSD Station Biologique
Résumé : International audience
This study deals with temporal variations in eel diet Anguilla anguilla sampled at each of the four seasons in the Languedocian Prévost lagoon (Gulf of Lion) from Autumn 1998 to Summer 1999. The following feeding indices were calculated based on observations of 12 categories of prey found in the contents of full stomachs: coefficient of vacuity CV, degree of fullness DR, occurrence frequency PP, relative abundance N (in %) and relative weight P (in %). The interpretation of results is also based on the Costello's method (1990) which combines PP and N. Anguilla anguilla mainly feeds on benthic organisms, primarily Gammarus gr. locusta, Polychaeta, insect larvae, small fish. Based on variations in eel diet, seasonal influence is illustrated by a decrease in feeding activity in summer which gradually increases during the following seasons. The good trophic quality available to eels in the Prévost lagoon depends on its hydrodynamics which is directly related to the movement of water entering and leaving lagoon by a short communication with the sea. This water movement accelerates the enrichment and production processes of this ecosystem. Changes observed during the four seasons illustrate an opportunistic type of feeding behaviour. Eels consume the most available benthic prey. They favour the importance of the prey at a given moment without using a particular feeding strategy like specialisation or generalisation. Thus, eel adapts its diet in adjusting available energy resources in the ecosystem. Because of this, the lagoon-resident species Anguilla anguilla is an obvious indirect bioindicator of the trophic capacity and present level of confinement in the brackish water lagoon ecosystem of Prévost.
ISSN: 0007-9723

hal-00753021
https://hal.univ-antilles.fr/hal-00753021

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Abstract This work shows the preparation, characterisation and testing of TiO2 membranes dip-coated on commercial α-Al2O3 tubes for desalination. TiO2 thin films (∼400 nm) were synthesised from titanium propoxide and exposed to a gentle thermal treatment to control particle and pore sizes (dp ∼ 4 nm). The TiO2 membranes were tested for brackish (0.3 wt%), sea water (3.5 wt%) and brine concentrations (7.5 and 10 wt%) up to 75°C in a pervaporation setup. Water fluxes as high as 10.5 kg m-2 h-1 were achieved for brackish concentrations, whilst values of up to 4.0 and 6.0 kg m-2 h-1 were measured for the highest brine concentration (10 wt%). Concentration and temperature polarisation both affected the water fluxes, particularly for brine solutions, though the latter was more dominant. Salt rejection remained very high at ∼99% for all tested conditions, thus demonstrating the feasibility of mesoporous inorganic TiO2 structures for desalination and brine processing. The TiO2 membranes proved to be stable for long term (>350 h) testing even under thermal cycling conditions. © 2015 Elsevier B.V. All rights reserved.
ISSN: 1383-5866

hal-01683212
https://hal.univ-antilles.fr/hal-01683212
DOI : 10.1016/j.seppur.2015.04.028

Éditeur(s) : HAL CCSD
Résumé : The Manche-à-Eau lagoon, brackish water ecosystem is subject to tide, trade winds and hurricanes. The 2004 map (IGN) is covered of a 90 m aside square, to place 37 spots in a GIS and to limit them on the field with a GPS. From aerial photos, the outlines drawing allows morphological follow up since 1950. Depth is measured at 1437 spots with bathymetric perch and prob. Stream direction is established during stream and ebb tide using ribbon fixed to the spot and a compass. Water volumes at low and high tide allow calculating the water renewal rate, at each tide. The mapping follow-up shows outlines and island stabilization because of the “shield effect” and soil (root peat), small islands aggregation/disaggregation depending of hurricanes passing. The present bathymetry shows the lagoon filling and the channels digging. General streams are subject to trade-winds (SSE-NNW) andthe tide movement to and fro. The up and down water generates a stream channel situated along the outlines and around dips and sandbanks. Water renewal volume (14.8 %) at each tide, combined with an active and various hydrodynamism tends to improve the water quality in this system.
Evolución Morfológica de la Laguna del Manglar Manche-à-EAU (Guadalupe, Antilles Francesas) de 1950 a 2004, y su batimetría eb 2007La laguna del Manche-à-Eau, ecosistema de agua salobre está sometido a la marea, a los alisios y a los huracanes. El mapa IGN de 2004 está dividido según una malla de 90 m para colocar 37 puntos en un SIG y limitarlos in situ con un GPS. Según las fotografías aéreas, el dibujo de los contornos hace posible el seguimiento morfológico desde 1950. La profundidad se mide en 1437 puntos con una pértiga y una sonda batimétrica. La orientación de las corrientes se establece en el mar y en el reflujo con catavientos fijados en los puntos, y una brújula. Las masas de agua entrantes y salientes permiten el cálculo del volumen de agua renovado durante cada marea. El seguimiento cartográfico muestra una estabilización de los contornos y de la isla debido al “efecto de escudo” y al suelo (turba de raíz), y una agregación/desagregación de los islotes según el paso de los huracanes. De acuerdo a la batimetría actual, se constatan el relleno de la laguna y la excavación de los canales. Las corrientes generales son controladas en superficie por los alisios, vientos de SSE-NNO y por el vaivén de la marea. Los movimientos ascendentes y descendentes de agua generan corrientes profundas a lo largo de los bordes y alrededor de depresiones y bajos. El volumen de agua renovado durante cada marea (14,8%) combinado al hidrodinamismo activo y variado tiende a vivificar este ecosistema.
La lagune de la Manche-à-Eau, écosystème d’eau saumâtre est soumis à la marée, aux alizés et aux ouragans. La carte IGN de 2004 est quadrillée selon une maille de 90 m pour placer 37 points dans un SIG et les borner sur le terrain avec un GPS. D’après les photographies aériennes, le dessin des contours rend possible le suivi morphologique depuis 1950. La profondeur est mesurée à 1437 points avec une perche et une sonde bathymétrique. L’orientation des courants est établie au flot et au jusant avec des penons fixés aux points, et une boussole. Les masses d’eau entrantes et sortantes permettent le calcul du volume d’eau renouvelé à chaque marée. Le suivi cartographique montre, une stabilisation des contours et de l’île due à « l’effet bouclier » et au sol (tourbe racinaire), et une agrégation/désagrégation des îlots selon le passage des ouragans. D’après la bathymétrie actuelle, le comblement de la lagune et le creusement des chenaux sont constatés. Les courants généraux sont gouvernés en surface par les alizés, vent de SSE-NNO et par le va-et-vient de la marée. Les descentes et remontées d’eau obligent ceux-ci à emprunter en profondeur les passages situés le long des berges et autour des dépressions et des hauts-fonds. Le volume d’eau renouvelé à chaque marée (14,8 %) combiné à l’hydrodynamisme actif et varié tend à vivifier cet écosystème.
Proceedings of the 61st Gulf and Caribbean fisheries institute
Le Gosier, Guadeloupe, France

hal-01600092
https://hal.archives-ouvertes.fr/hal-01600092
PRODINRA : 384819

Éditeur(s) : Elsevier Science Bv
Résumé : In tropical shrimp ponds, the increasing of feed input, concomitantly with the stocking shrimp biomass, induces an eutrophication of the ecosystem. Although difficult to maintain, its stability is required to guarantee the success of the culture. A 110-day period of phytoplankton and bacterioplankton stock and dynamics in an earthen pond (1.2 ha area, 1 m depth) was monitored using flow cytometry to provide baseline information on community characteristics and ecosystem instability. Seven autotrophic cell types were identified over the whole sampling period. Prokaryotic cells included Synechococcus sp., a group named UNK which presented an atypical new flow cytometric signature and picoeukaryotes (PEUK). Nanophytoplankton cells were represented by 4 groups: NAN1, NAN2, NAN3 and Cryptophytes. During the first part of the survey, picophytoplankton dominated the phytoplanktonic assemblage. The mean abundance of total cells (up to 8 x 10(6) cells mL(-1)) was among the highest recorded in marine and brackish waters. Bacterial abundance and production ranged from 0.8 to 5.1 x 10(7) cells mL(-1) and from 30 to 110 mu g C L-1 h(-1). A shift from pico to nanophytoplankton abundance was observed for a few days from d 96. During this period, heterotrophic bacteria production and abundance suddenly dropped, implying a change in the functioning of the microbial loop. This shift was concomitant with a significant shrimp mortality outbreak due to Vibrio penaeicida, the etiological agent of a disease known as Syndrome 93, which affects the shrimp industry in New Caledonia. This survey suggests that flow cytometric analysis could be used for the monitoring of aquaculture systems to improve our understanding of the complex phytoplankton and bacterial dynamics of these systems and its potential influence on disease development. (c) 2010 Elsevier B.V. All rights reserved.
Aquaculture (0044-8486) (Elsevier Science Bv), 2010-12 , Vol. 310 , N. 1-2 , P. 112-121

Droits : 2010 Elsevier B.V. All rights reserved.
http://archimer.ifremer.fr/doc/00029/14068/11312.pdf
DOI:10.1016/j.aquaculture.2010.10.022
http://archimer.ifremer.fr/doc/00029/14068/

Éditeur(s) : Actes de colloques Ifremer, Tahiti, French Polynesia, 20 Feb - 4 Mar 1989, n°9, chap. 46, pp.487-498
Résumé : The Caribbean Marine Research Centre is conducting research on the development of methods for intensive culture of euryhaline red tilapias in marine environments for application to Caribbean islands and similar regions with limited freshwater resources.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/1989/acte-1493.pdf
http://archimer.ifremer.fr/doc/00000/1493/

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The marine Messinian deposits of Tunisia cover a narrow littoral strip some 300 km long between the northern Bizerte and Cap Bon areas and the central-eastern Sahel region. Litho- and biofacies analysis of six stratigraphic sections reveals the distinctive features of these deposits.;The lower Messinian deposits are characterized by ubiquitous siliciclastics and abundant oolitic/bioclastic limestones organized in an eastward facing ramp. Westward (landward), this ramp changes into coastal lagoons, sometimes containing evaporites. Eastward, the ramp passes to the reefal Pelagian Platform extending as far as Lampedusa.;Two main sedimentary cycles are distinguished: 1) an early Messinian siliciclastic retrogradational then oolitic/bioclastic progradational cycle (Beni Khiar Formation and lower Oued bel Khedim Formation): 2) a late Messinian brackish to continental cycle that probably accumulated in rapidly subsiding lagoons (Cued el Bir Formation and upper Oued bel Khedim Formation). The Tunisian early Messinian cycle is partly eustatically controlled, but the late Messinian cycle cannot be confidently correlated to other well-known Messinian series because of tectonic movements.;The lower Messinian deposits of Tunisia are also characterized by abundant suspension-feeding organisms (molluscs and bryozoans) and rare corals, calcareous algae, echinoids, and larger benthic foraminifers. The proposed palaeoenvironmental model shows that the lower Messinian ramp of Tunisia was located on a current-protected margin and subjected to continent-derived sediment and nutrient supply. Eastward, nutrient influx diminished and a shallow-water isolated carbonate platform with coralgal facies developed between the western and the eastern Mediterranean basins. The main hydrological connection between these two basins occurred through a narrow seaway situated to the northeast of the Pelagian Platform, south of Sicily and Malta.
ISSN: 0031-0182

hal-00475583
https://hal.archives-ouvertes.fr/hal-00475583
DOI : 10.1016/j.palaeo.2009.10.028

Éditeur(s) : HAL CCSD Society for Molecular Biology and Evolution
Résumé : International audience
Vibrio metoecus is the closest relative of Vibrio cholerae, the causative agent of the potent diarrheal disease cholera. Although the pathogenic potential of this new species is yet to be studied in depth, it has been co-isolated with V. cholerae in coastal waters and found in clinical specimens in the USA. We used these two organisms to investigate the genetic interaction between closely related species in their natural environment. The genomes of twenty V. cholerae and four V. metoecus strains isolated from a brackish coastal pond on the US east coast, as well as four clinical V. metoecus strains were sequenced and compared to reference strains. Whole genome comparison shows 86-87% average nucleotide identity (ANI) in their core genes between the two species. On the other hand, the chromosomal integron, which occupies approximately 3% of their genomes, shows higher conservation in ANI between species than any other region of their genomes. The ANI of 93-94% observed in this region is not significantly greater within than between species, meaning that it does not follow species boundaries. V. metoecus does not encode toxigenic V. cholerae major virulence factors, the cholera toxin and toxin co-regulated pilus. However, some of the pathogenicity islands found in pandemic V. cholerae were either present in the common ancestor it shares with V. metoecus, or acquired by clinical and environmental V. metoecus in partial fragments. The virulence factors of V. cholerae are therefore both more ancient and more widespread than previously believed. There is high interspecies recombination in the core genome, which has been detected in 24% of the single-copy core genes, including genes involved in pathogenicity. V. metoecus was six times more often the recipient of DNA from V. cholerae as it was the donor, indicating a strong bias in the direction of gene transfer in the environment.
ISSN: 1759-6653

Droits : http://creativecommons.org/licenses/by/
hal-01264332
http://hal.upmc.fr/hal-01264332
http://hal.upmc.fr/hal-01264332/document
http://hal.upmc.fr/hal-01264332/file/Genome%20Biol%20Evol-2015-Orata-gbe_evv193.pdf
DOI : 10.1093/gbe/evv193

Éditeur(s) : Cambridge Univ Press
Résumé : Integrated Multi-Trophic Aquaculture takes advantage of the mutualism between some detritivorous fish and phytoplankton. The fish recycle nutrients by consuming live (and dead) algae and provide the inorganic carbon to fuel the growth of live algae. In the meanwhile, algae purify the water and generate the oxygen required by fishes. Such mechanism stabilizes the functioning of an artificially recycling ecosystem, as exemplified by combining the euryhaline tilapia Sarotherodon melanotheron heudelotii and the unicellular alga Chlorella sp. Feed addition in this ecosystem results in faster fish growth but also in an increase in phytoplankton biomass, which must be limited. In the prototype described here, the algal population control is exerted by herbivorous zooplankton growing in a separate pond connected in parallel to the fish-algae ecosystem. The zooplankton production is then consumed by tilapia, particularly by the fry and juveniles, when water is returned to the main circuit. Chlorella sp. and Brachionus plicatilis are two planktonic species that have spontaneously colonized the brackish water of the prototype, which was set-up in Senegal along the Atlantic Ocean shoreline. In our system, water was entirely recycled and only evaporation was compensated (1.5% volume/day). Sediment, which accumulated in the zooplankton pond, was the only trophic cul-de-sac. The system was temporarily destabilized following an accidental rotifer invasion in the main circuit. This caused Chlorella disappearance and replacement by opportunist algae, not consumed by Brachionus. Following the entire consumption of the Brachionus population by tilapias, Chlorella predominated again. Our artificial ecosystem combining S. m. heudelotii, Chlorella and B. plicatilis thus appeared to be resilient. This farming system was operated over one year with a fish productivity of 1.85 kg/m(2) per year during the cold season (January to April).
Animal (1751-7311) (Cambridge Univ Press), 2013-02 , Vol. 7 , N. 2 , P. 322-329

Droits : The Animal Consortium 2012
http://archimer.ifremer.fr/doc/00118/22955/20945.pdf
DOI:10.1017/S1751731112001279
http://archimer.ifremer.fr/doc/00118/22955/

Éditeur(s) : HAL CCSD Cambridge University Press (CUP)
Résumé : International audience
Diverse, abundant and usually well-preserved communities of skeletal organisms occur in the lower Pleistocene (Gelasian) siliciclastic deposits of the Greek island of Rhodes. Benthic foraminifers, molluscs and bryozoans have been studied in four measured and sampled sections located in the northern part of the island. Among these bottom-dwelling organisms, numerous extant taxa are good environmental indicators and, combined with field observations and sedimentological data, they provide information on the probable conditions in which they developed. The siliciclastic deposits of the Kritika Formation have been divided into 14 different bio- and lithofacies, which have been further grouped into four facies associations corresponding to four different environmental settings: (1) continental to fluviatile; (2) brackish-water (lagoonal/deltaic); (3) infralittoral (0–20 m); and (4) upper circalittoral (depths of 20–40 m, but also down to c. 50–60 m). Among the marine facies associations, several characteristic biocoenoses have been recognized: soft-bottoms (fine to coarse sands and gravels); seagrass meadows; biogenic calcareous crusts on drowned beachrock slabs; red algal rhodoliths; and bivalve shell beds. In the studied sections, 13 superimposed genetic sequences have been documented. The repetition of similar facies associations within each sequence suggests: (1) a possibly eustasy-controlled, cyclic sedimentation; (2) a general subsidence of Rhodes during the deposition of the studied facies associations; and (3) a mostly constant range of environmental conditions (i.e. sedimentation rates and temperature) throughout the Gelasian.
ISSN: 0016-7568

hal-01277829
https://hal.archives-ouvertes.fr/hal-01277829
DOI : 10.1017/S0016756815000230

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
The coastal sediments of Rhodes in the eastern Mediterranean have recorded transgression-regression cycles that took place during the early Pleistocene. The sedimentary deposits from the Kritika Member of the Rhodes Formation consist in conglomerates, sandstones, siltstones and clays deposited in brackish to shallow marine environments. Faunal associations are dominated by molluscs and reveal rapid ecological changes. Carbon and oxygen isotope ratios of aquatic skeletal carbonates show that these ecological changes were most likely driven by large salinity changes while water temperature remained rather constant at about 22.0 ± 1.5 °C. The tectonic activity of the island rather than glacio-eustatic variations of climatic origin is advocated to be responsible for the ecological and salinity changes and sea-level variations recorded in the sedimentary sequence.
ISSN: 0031-0182

hal-00767568
https://hal.archives-ouvertes.fr/hal-00767568
DOI : 10.1016/j.palaeo.2012.06.009

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Forty years after the image of the Mediterranean transformed into a giant salty lake was first conceived, the fascinating history of the Messinian Salinity Crisis (MSC) still arouses great interest across a large and diverse scientific community. Early outcrop studies which identified severe palaeoenvironmental changes affecting the circum-Mediterranean at the end of the Miocene, were followed by investigations of the marine geology during the 1950s to 1970s. These were fundamental to understanding the true scale and importance of the Messinian event. Now, after a long period of debate over several entrenched but largely untested hypotheses, a unifying stratigraphic framework of MSC events has been constructed. This scenario is derived mainly from onshore data and observations, but incorporates different perspectives for the offshore and provides hypotheses that can be tested by drilling the deep Mediterranean basins.The MSC was an ecological crisis, induced by a powerful combination of geodynamic and climatic drivers, which had a great impact on the subsequent geological history of the Mediterranean area, and on the salinity of the global oceans. These changed the Mediterranean's connections with both the Atlantic Ocean and the freshwater Paratethyan basins, causing high-amplitude fluctuations in the hydrology of the Mediterranean. The MSC developed in three main stages, each of them characterized by different palaeoenvironmental conditions. During the first stage, evaporites precipitated in shallow sub-basins; the MSC peaked in the second stage, when evaporite precipitation shifted to the deepest depocentres; and the third stage was characterized by large-scale environmental fluctuations in a Mediterranean transformed into a brackish water lake.The very high-resolution timescale available for some Late Miocene intervals in the Mediterranean makes it possible to consider environmental variability on extremely short time scales including, in some places, annual changes. Despite this, fundamental questions remain, some of which could be answered through new cores from the deepest Mediterranean basins. Improvements in seismic imaging and drilling techniques over the last few decades make it possible to plan to core the entire basinal Messinian succession for the first time. The resulting data would allow us to decipher the causes of this extreme environmental change and its global-scale consequences.
ISSN: 0025-3227

hal-01115664
https://hal.archives-ouvertes.fr/hal-01115664
DOI : 10.1016/j.margeo.2014.02.002

Résumé : Le mérou géant, Epinephelus itajara, espèce en danger critique d’extinction au niveau mondial, est présent dans les eaux turbides et saumâtres de la Guyane française où l’espèce est exploitée par une pêcherie côtière. Dans la partie est du plateau continental guyanais, les mérous géants se localisent autour de tous les sites rocheux marins où ils se répartissent en fonction de la profondeur et du faciès (éboulis ou tombant). Les analyses des isotopes stables du carbone et de l’azote suggèrent qu’environ 30 % des mérous géants < 115 cm présents sur ces sites rocheux, proviendraient des mangroves alentours. Les analyses de contenus stomacaux révèlent un changement ontogénétique du régime alimentaire. Les petits individus (< 90 cm) s’alimentent principalement de Crustacés puis intègrent progressivement les poissons à leur alimentation jusqu’à devenir essentiellement piscivores au-delà de 140 cm. La population de Guyane est principalement composée d’individus juvéniles : seulement 8,5 % des individus capturés en Guyane a plus de 6 ans. Ces jeunes mérous sont très territoriaux durant les 4-5 premières années de leur vie puis ne sont plus retrouvés sur les sites rocheux. Le devenir de ces juvéniles est incertain, soit ils sont pêchés, soit ils migrent vers d’autres sites ou vers les agrégations de reproduction. Cependant, les mérous géants ne semblent pas se reproduire en Guyane. Il est possible que les conditions environnementales (forte turbidité et température) ne favorisent pas le développement gonadique, ce qui engendrerait une omission totale de reproduction. Le suivi par tags satellite suggère que les mérous géants migrent dans le sens des courants marins vers Trinidad-et-Tobago, potentiellement pour la reproduction. Aucun mouvement vers le Brésil n’a été mis en évidence bien que les stocks de mérous géants du Brésil et de Guyane semblent liés. En effet, ces deux stocks évoluent conjointement avec un déclin des populations au début des années 90. Le maintien de la population de mérou géant en Guyane se ferait grâce à l’apport de larves des sites d’agrégation du Brésil par le courant marin. La mortalité totale des mérous géants (0,65) est aussi élevée au sein de la réserve marine ainsi que sur les sites de pêche. Cela suggère que l’interdiction de pêche à la réserve n’est pas respectée et que les grands individus quittent la réserve pour des sites plus spacieux. En supposant que la population de mérous géants adultes a été réduite à cause de la pêche, une protection régionale des individus > 150 cm doit être instaurée afin de régénérer le stock d’individus matures. Il semble nécessaire de développer une politique de gestion internationale de l’espèce, surtout entre la Guyane et le Brésil, afin de conserver les populations de mérous géants d’Amérique du Sud.
The critically endangered Goliath Grouper, Epinephelus itajara, is found in the turbid and brackish waters of French Guiana, where the species is subject to a coastal fishery. Goliath Grouper populations inhabit all rocky habitats and exhibit increasing abundance with depth. Around 30% of individuals less than 115 cm may derive from the abundant mangrove habitat along the french Guiana coast. There is a ontogenetic shift of the diet, primarily crustacivorous, individuals >140 cm become piscivorous. The Goliath Grouper population in French Guiana is composed primarily og juvelines. The fate of the juvelines is unknonw, some may be caught in the fishery, others may move to other habitat. No evidence of spawning or gonadal readiness was found in french Guiana. it is possible that environmental conditions (high turbidity and temperature) are not conducive to reproductive activity. Goliath Grouper may migrate down current from French Guiana to Trinidad and Tobago or further. No movement of Goliath Grouper was found against the current toward Brazil. French Guiana juveniles may be derived from spawns occuring off Brazil. Calculated total mortality of Goliath Grouper off French Guiana is high (0.65) in both fished and protected areas suggesting that illegal fishing is occuring within the protected area, or that emigration rates are high. Assuming that the adult population of Goliath Grouper in French Guiana has been reduced due to fishing, protection of spawning-size adults (larger than about 150 cm TL) should be instated.

http://www.theses.fr/2014AGUY0721/document

Éditeur(s) : HAL CCSD Institute of Oceanography and Fisheries, Split
Résumé : International audience
This study deals with temporal variations in eel Anguilla anguilla diet, sampled seasonally in the Languedocian Mauguio lagoon (Gulf of Lion), from Autumn 1998 to Summer 1999. Eel mainly feeds on benthic organisms, primarily small Amphipoda, Crustacea (mainly Gammarus gr. locusta), Polychaeta, insect larvae (Chironomidae) and small fish. Based on variations in the eels feeding regime, seasonal influence is illustrated by decreased feeding activity in summer, which progressively increases during the following seasons. The trophic quality available to eels in the Mauguio lagoon depends more on allochtonous inputs from the catchment area than on its own hydrodynamics on which water of marine origin has little influence due to its long distance from the sea. Variations observed during the four seasons illustrate the opportunist type feeding behaviour of eels. They consume the most available benthic preys at a given moment without using a particular feeding strategy like specialisation or generalisation. Eel adapts its diet according to the available resources offered by the ecosystem. Because of this eel, as an amphihaline migrant species, can be characterised as an obvious indirect bioindicator of the trophic capacity and very marked level of confinement in the brackish lagoon ecosystem of Mauguio.
ISSN: 0001-5113

hal-00750416
https://hal.univ-antilles.fr/hal-00750416
https://hal.univ-antilles.fr/hal-00750416/document
https://hal.univ-antilles.fr/hal-00750416/file/Acta_Adriatica_2009_50_2_.pdf