Éditeur(s) : HAL CCSD Oxford University Press (OUP)
Résumé : This paper presents an inversion method using the interseismic velocity field to determine effective rigidity of the lithosphere. The method is based on the minimization of a cost function defined as the quadratic measure of the difference between measured and modelled velocity fields on a discrete set of points. The continuous mapping of the rigidity is fulfilled with a limited set of parameters and the forward solution is achieved using a plane stress finite element code. The computation of the cost function gradient in the parameters' space allows one to iteratively find the best parameters set through a suitable optimization algorithm.;We first design a benchmark including an abrupt rigidity variation that cannot be described by a continuous function. For such a case, we show that increasing the number of parameters is a way to accurately describe sharp variations of the rigidity map. Then, we use a dense GPS velocity field over the southwestern United States to estimate the corresponding rigidity variations for different spatial resolutions of the parameters' grid. We analyse the conceptual and practical difficulties associated with our methodology. Finally, rigidity maps obtained by our inversion method in southwestern United States and particularly across the San Andreas Fault System are reviewed and compared to current plate rigidity estimates and geophysical data over this area.
ISSN: 0956-540X

hal-00669897
https://hal.archives-ouvertes.fr/hal-00669897
DOI : 10.1111/j.1365-246X.2011.05192.x

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Experimental modelling applied to the study of orogenic wedge dynamics has been a subject of fruitful research for more than 30 years, although the technique dates back as far as the early XIXth century. On one hand, several first order parameters controlling the structural evolution of mountain belts have been intensively investigated using the classic tectonic "sandbox" models. The main parameters are the properties of the basal décollement, the deforming material, the backstop, and fluxes, kinematics and surface processes. On the other hand, the morphological evolution of a mountain relief subjected to changing tectonic or climatic forcing has been addressed using another kind of approach called "geomorphic" models. Nowadays, the literature is extremely rich, particularly for the sandbox technique, so that it becomes difficult to have an exhaustive view of the effects of the above parameters on mountain evolution. In this article, we propose a detailed review of the main results obtained using both "tectonic" and "geomorphic" approaches. Our goal is to provide an almost complete state-of-the-art in the experimental study of relief dynamics to guide present and future researchers in their understanding of mountain belt evolution.
ISSN: 0040-1951

hal-00757713
https://hal.archives-ouvertes.fr/hal-00757713
DOI : 10.1016/j.tecto.2012.01.027

Éditeur(s) : HAL CCSD Institute of Electrical and Electronics Engineers Inc.
Résumé : International audience
An important issue in epilepsy research is to understand the structural and functional modifications leading to chronic epilepsy, characterized by spontaneous recurrent seizures, after initial brain insult. To address this issue, we recorded and analyzed electroencephalography (EEG) and quantitative magnetic resonance imaging (MRI) data during epileptogenesis in the in vivo mouse model of Medial Temporal Lobe Epilepsy (MTLE, kainate). Besides, this model of epilepsy is a particular form of drug-resistant epilepsy. The results indicate that high-field (4.7T) MRI parameters (T2-weighted; T2-quantitative) allow to detect the gradual neuro-anatomical changes that occur during epileptogenesis while electrophysiological parameters (number and duration of Hippocampal Paroxysmal Discharges) allow to assess the dysfunctional changes through the quantification of epileptiform activity. We found a strong correlation between EEG-based markers (invasive recording) and MRI-based parameters (non-invasive) periodically computed over the 'latent period' that spans over two weeks, on average. These results indicated that both structural and functional changes occur in the considered epilepsy model and are considered as biomarkers of the installation of epilepsy. Additionally, such structural and functional changes can also be observed in human temporal lobe epilepsy. Interestingly, MRI imaging parameters could be used to track early (day-7) structural changes (gliosis, cell loss) in the lesioned brain and to quantify the evolution of epileptogenesis after traumatic brain injury. © 2016 IEEE.
38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2016
Unknown, Unknown or Invalid Region

hal-01467552
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01467552
DOI : 10.1109/EMBC.2016.7591605

Éditeur(s) : HAL CCSD
Résumé : 20 pp
We first analyze some atmospheric parameters measured in 2004 at the top of La Soufrière volcano: wind speed, pressure and temperature. Next, we study the stochastic process of the wind speed modulus which is of interest for prediction of pollution induced by the plume. We fit to the data various models : FARIMA, periodic trend plus multifractional Brownian noise, multifractal continuous cascades. The estimations show that they evoluate during some transition phases in response to environment changes. Thus, we finally suggest, for future works, some settings that should be more appropriate: time series with regime changes and stochastic processes in random environment.
https://hal.archives-ouvertes.fr/hal-00165572

hal-00165572
https://hal.archives-ouvertes.fr/hal-00165572
https://hal.archives-ouvertes.fr/hal-00165572/document
https://hal.archives-ouvertes.fr/hal-00165572/file/Windsouf_v11.pdf

Éditeur(s) : HAL CCSD Publisher : Paris : Baillière [1980-. Latest Publisher : Paris : Elsevier
Résumé : National audience
Introduction Les monocytes sont constitués de populations cellulaires hétérogènes aux propriétés distinctes. Il est retrouvé une sur-représentation de la population monocytaire CD14+/CD16+ pro-inflammatoire au cours de certaines connectivites. Cette population monocytaire s’oppose aux monocytes CD14+/CD16– qui jouent un moindre rôle dans l’amplification de la réponse inflammatoire. Les monocytes et les macrophages pourraient jouer un rôle central dans les mécanismes de fibrose au cours de la sclérodermie systémique. L’association entre les manifestations cliniques de la sclérodermie systémique et les différentes populations monocytaires reste à préciser. L’objectif de cette étude « proof of concept »est d’évaluer l’association entre la population monocytaire CD14+/CD16+ et les manifestations cliniques de fibrose chez les patients sclérodermiques. Patients et méthodes Cinquante-cinq patients répondant aux critères ACR 2013 de sclérodermie systémique ont été inclus de manière consécutive de mars à juillet 2015. Les atteintes fibrosantes ont été évaluées simultanément selon les données du bilan viscéral annuel en centre de compétence : l’atteinte cutanée était évaluée cliniquement selon le score de Rodnan modifié, les patients étaient classés selon la classification de Leroy (atteinte cutanée diffuse, atteinte cutanée limitée, sine scleroderma). La présence d’une pneumopathie interstitielle diffuse était évaluée par TDM thoracique, son retentissement sur la fonction respiratoire était précisé par les épreuves fonctionnelles respiratoires (capacité pulmonaire totale, capacité vitale forcée, DLCO). La NFS réalisée le jour du bilan viscéral était traitée en hématoflow permettant de préciser les sous populations monocytaires en fonction de leur statut CD16+ ou CD16–. Les données cliniques étaient relevées en aveugle vis-à-vis des données de cytométrie en flux. Résultats 55 patients sclérodermiques ont été inclus. Le taux moyen de monocytes CD16+ était de 0,054 G/L (SD = 0,029). Les patients avec une atteinte cutanée diffuse avaient des taux significativement plus élevés de monocytes CD16+ (p = 0,021), alors que les taux de monocytes CD16–ne différaient pas entre les patients avec atteinte cutanée diffuse et cutanée limitée. Le score de Rodnan modifié était corrélé de manière significative avec le taux de monocytes CD16+ (R = 0,513, p < 0,001). Il existait une tendance à l’association entre des taux élevés de CD16+ et la présence d’une pneumopathie interstitielle diffuse détectée par TDM (p = 0,113). Il existait une corrélation négative significative (p < 0,05) entre les taux de CD16+ et les résultats des épreuves fonctionnelles respiratoires (capacité pulmonaire totale et DLCO), attestant d’une fonction respiratoire moins bonne chez les patients à taux plus élevés de monocytes CD16+. Il n’était pas retrouvé d’association entre les taux de CD16+ et les autres paramètres cliniques ou immunologiques. Discussion Cette étude « proof of concept » semble montrer une association entre des taux élevés de monocytes CD16+ et certains paramètres de gravité des atteintes fibrosantes de la maladie. En plus de leur association à la gravité des atteintes fibrosantes de la sclérodermie systémique, les taux de monocytes CD16+ pourraient également avoir un intérêt pronostique qui reste à évaluer. Des travaux in vitro ont montré que l’ajout de TGFb au milieu de culture cellulaire de monocytes induisait une augmentation de l’expression du CD16+ par ces monocytes. Les monocytes CD16+ sont également une source de production d’IL-1 bêta et de TNF alpha pro-inflammatoires. D’autres travaux in vitro ont très récemment démontré la plus grande capacité des monocytes CD16+ à se différencier préférentiellement en macrophages ayant également des propriétés pro-inflammatoires. La sous-population monocytaire CD16+ peut également être hiérarchisée en fonction de l’intensité d’expression du CD16. La place précise de ces différentes populations monocytaires dans la physiopathologie de la sclérodermie systémique reste encore à déterminer. Les liens ténus entre monocytes et macrophages, dont l’implication est maintenant reconnue au cours de la sclérodermie invitent à investiguer davantage le rôle possible du monocyte dans le cadre de cette maladie inflammatoire et fibrosante afin d’identifier d’éventuelles nouvelles cibles thérapeutiques ou marqueurs pronostiques. Conclusion Dans cette étude « proof of concept », sur un nombre restreint de patients atteints de sclérodermie systémique répondants aux critères ACR 2013, le taux de monocytes CD16+ semble corrélé avec les atteintes fibrosantes de la maladie, laissant supposer une implication possible de cette sous-population monocytaire dans la physiopathologie de cette connectivite
ISSN: 0248-8663

hal-01321851
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01321851
DOI : 10.1016/j.revmed.2016.04.253

Éditeur(s) : HAL CCSD AGU and the Geochemical Society
Résumé : International audience
1] Recent statistical analysis by Lallemand et al. (2008) of subduction zone parameters revealed that the back-arc deformation mode depends on the combination between the subducting (nu(sub)) and upper (nu(up)) plate velocities. No significant strain is recorded in the arc area if plate kinematics verifies nu(up) = 0.5 vsub - 2.3 (cm/a) in the HS3 reference frame. Arc spreading ( shortening) occurs if nu(up) is greater ( lower) than the preceding relationship. We test this statistical law with numerical models of subduction, by applying constant plate velocities far away from the subduction zone. The subducting lithosphere is free to deform at all depths. We quantify the force applied on the two converging plates to sustain constant surface velocities. The simulated rheology combined viscous (non-Newtonian) and brittle behaviors, and depends on water content. The influence of subduction rate vs is first studied for a fixed upper plate. After 950 km of convergence ( steady state slab pull), the transition from extensional to compressive stresses in the upper plate occurs for vs similar to 1.4 cm/a. The effect of upper plate velocity is then tested at constant subduction rate. Upper plate retreat ( advance) with respect to the trench increases extension ( compression) in the arc lithosphere and increases ( decreases) the subducting plate dip. Our modeling confirms the statistical kinematic relationship between vsub and nu(up) that describes the transition from extensional to compressive stresses in the arc lithosphere, even if the modeled law is shifted toward higher rates of upper plate retreat, using our set of physical parameters ( e. g., 100 km thick subducting oceanic plate) and short- term simulations. Our results make valid the choice of the HS3 reference frame for assessing plate velocity influence on arc tectonic regime. The subduction model suggests that friction along the interplate contact and the mantle Stokes reaction could be the two main forces competing against slab pull for upper mantle subductions. Besides, our simulations show that the arc deformation mode is strongly time dependent.
ISSN: 1525-2027

hal-00412328
https://hal.archives-ouvertes.fr/hal-00412328
https://hal.archives-ouvertes.fr/hal-00412328/document
https://hal.archives-ouvertes.fr/hal-00412328/file/arcayG32008.pdf
DOI : 10.1029/2007GC001875

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Diffusion parameters for HTO, 36Cl−, and 125I− were determined on Upper Toarcian argillite samples from the Tournemire Underground Research Laboratory (Aveyron, France) using the through diffusion technique. The direction of diffusion was parallel to the bedding plane. The purpose of the present study was 3-fold; it was intended (i) to confirm the I− interaction with Upper Toarcian argillite and to verify the effects of initial I− concentration on this affinity, as previously observed by means of radial diffusion experiments, (ii) to highlight any discrepancy between Cl− and I− diffusivity, and (iii) to investigate the effect of an increase of the ionic strength of the solution on the anionic tracers' diffusive behaviour. The results show that the effective diffusion coefficient (De) and diffusion accessible porosity (εa) values obtained with an ionic strength (I.S.) synthetic pore water of 0.01 eq L−1 are: De = 2.35-2.50 × 10−11 m2 s−1 and εa = 12.0-15.0% for HTO, and De = 14.5-15.5 × 10−13 m2 s−1 and εa = 2.5-2.9% for 36Cl−. Because of anionic exclusion effects, anions diffuse slower and exhibit smaller diffusion accessible porosities than HTO, taken as a water tracer. The associated effective diffusion coefficient (De) and rock capacity factor (α) obtained for 125I are: De = 7.00-8.60 × 10−13 m2 s−1 and α = 4.3-7.2%. Such values make it possible to calculate low 125I distribution ratios (0.0057 < RD < 0.0192 mL g−1) which confirm the trend indicating that the 125I rock capacity factor increases with the decrease of the initial I− concentration. Additional through-diffusion experiments were carried out with a higher ionic strength synthetic pore water (I.S. = 0.11 eq L−1). No evolution of HTO diffusion parameters was observed. The anionic tracers' effective diffusion coefficient increased by a factor of two but no clear evolution of their accessible porosity was observed. Such a paradox could be related to the particularly small mean pore size of the Upper Toarcian argillite of Tournemire. The most significant finding of this study is the large discrepancy (factor of two) between the values of the effective diffusion coefficient for 125I and 36Cl. Whatever the ionic strength of the synthetic solution used, 125I exhibited De values two times lower than those of 36Cl. A detailed explanation for this difference cannot be given at present even if a hypothesis based on ion-pairing or on steric-exclusion cannot be excluded. This makes questionable the assumption usually made for quantifying 125I sorption and postulating that 36Cl and 125I would diffuse in the same porosity. In other terms, at Tournemire, 125I sorption could be more pronounced than previously indicated.
ISSN: 0883-2927

hal-00757749
https://hal.archives-ouvertes.fr/hal-00757749
DOI : 10.1016/j.apgeochem.2011.12.017

Éditeur(s) : HAL CCSD
Résumé :   Diplôme : DEA
il s'agit d'un type de produit dont les métadonnées ne correspondent pas aux métadonnées attendues dans les autres types de produit : DISSERTATION
Links between architectural stages of development (ASD), photosynthetic capacities and leaf characteristics in Tachigali melinonii (Caesalpiniaceae) were investigated in the tropical forest of French Guiana. Three ASD were sampled under three light conditions to elucidate the impact of ASD- and light-related changes on photosynthetic functional traits. Photosynthetic parameters (maximum rate in RubisCO carboxylation (Vcmax) and maximum rate of electron transport (Jmax) were estimated by adjusting a biochemical model (Farquhar et al., 1980) to response curves of CO2 assimilation rate to intercellular CO2 concentration, under saturated light. In addition, N and C foliar concentrations were analysed and N allocations to the carboxylation and bioenergetic processus of photosynthesis were calculated using the model of Niinemets and Tenhunen (1997). The variations in ecophysiological parameters observed were due to leaf anatomical and structural changes instead of changes in photosynthetic components, suggesting adjustments to light conditions. Tachigali melinonii thus appears to display morphological and anatomical plasticity at different ASDs and under different light conditions.
Une espèce forestière de Guyane Française, Tachigali melinonii (Caesalipiniaceae), a été choisie afin de regarder la variation des traits fonctionnels relatifs à la photosynthèse en fonction de la disponibilité en lumière et en fonction de son stade de développement architectural. Du fait du tempérament de l'espèce vis-à-vis de la lumière de type «struggling gambler» (ombrage nécessaire aux jeunes stades puis développement en pleine lumière), trois stades clefs de développement parmi la séquence de différenciation de l'espèce ainsi que trois environnements lumineux ont été choisis. Les capacités photosynthétiques foliaires ont été estimées à partir de l'ajustement de paramètres du modèle biochimique de photosynthèse foliaire (Farquhar et al. 1980) sur des courbes de réponses de l'assimilation de CO² (A) à des concentrations intracellulaires en CO² (Ci) croissantes, en condition de lumière saturante. La vitesse maximale de carboxylation Vcmax et le flux maximal d'électrons photosynthétiques Jmax ont ainsi été estimés et ensuite reliés aux caractéristiques structurales foliaires, notamment la concentration en azote, en carbone ainsi qu'avec la densité et l’épaisseur. Les fractions d'azote allouées aux processus photosynthétiques de carboxylation et de bioénergétique ont été calculées. Des variations, dues à un effet du stade de développement sur les paramètres étudiés ainsi qu’à un effet de la quantité de lumière disponible, ont été constatées. Ces variations sont surtout liées à des ajustements anatomiques et structuraux foliaires et non à des modifications de l’appareil photosynthétique. Tachigali melinonii semble donc modifier ses caractéristiques structurales foliaires en fonction de son stade de développement, ce qui suppose un contrôle ontogénique partiel, et en fonction de la disponibilité en lumière.
https://hal.archives-ouvertes.fr/hal-01189520

hal-01189520
https://hal.archives-ouvertes.fr/hal-01189520
PRODINRA : 44951

Éditeur(s) : American Geophysical Union
Résumé : [1] Extreme weather events such as tropical cyclones are difficult to observe with conventional means. Satellite-based observations provide essential measurements of key parameters governing tropical cyclones. They are critical for short-term forecasting. Radiometers onboard the Defense Meteorological Satellite Program satellite series, WindSat and Tropical Rainfall Measuring Mission satellites, scatterometers onboard the ERS, ADEOS, and QuikScat satellites offer unprecedented synoptic observations of surface wind and atmospheric liquid water content, revealing the storm structures with good accuracy. However, satellite estimates do not provide direct measurements of geophysical parameters and can suffer from limitations linked to the sensors characteristics, such as the signal wavelength and polarization or the measurement incidence angle. For example, measurements at Ku band are strongly affected by rain. Still, each observing system can offer specific information that can be combined with the others. In particular, we highlight the capabilities of dual-frequency altimeter to provide very high resolution measurements of rain rate, surface wind speed, and wave characteristics. A method is proposed to obtain continuous along-track 5 km resolution measurements of these parameters in the tropical cyclone Isabel. The results shows that dual-frequency altimeters can provide useful information to complement and validate the operational fields provided by the atmospheric numerical models and by NOAA observing systems.
Journal of Geophysical Union - Research C - Oceans (0148-0227) (American Geophysical Union), 2006 , Vol. 111 , N. C1 , P. NIL_38-NIL_50

Droits : 2006 American Geophysical Union
http://archimer.ifremer.fr/doc/2006/publication-1033.pdf
DOI:10.1029/2005JC003068
http://archimer.ifremer.fr/doc/00000/1033/

Éditeur(s) : HAL CCSD
Résumé : International audience
BACKGROUND: The effects of pressure-controlled (PC) ventilation on the ventilatory and haemodynamic parameters during laparoscopy procedures had not been carefully assessed. This prospective cross-over study was undertaken to compare how volume-controlled (VC) and PC modes could affect pulmonary mechanics, gas exchange, and cardiac function in patients undergoing laparoscopy. METHODS: Twenty-one patients undergoing laparoscopic urological procedures had their lungs ventilated at the beginning with VC ventilation. PC ventilation was instituted at the end of the VC sequence. Ventilator settings were adjusted to keep tidal volume, respiratory rate, and Fi(o(2)) constant in every mode. A complete set of ventilatory, haemodynamic, and gas exchange parameters was obtained under VC after 40 min of pneumoperitoneum and 20 min after switching for PC. Transoesophageal echocardiography was performed in order to evaluate systolic and diastolic function of the heart. RESULTS: When VC was switched to PC, peak airway pressure decreased [mean (sd) 32 (6) vs 27 (6) cm H(2)O; P < 0.0001], peak inspiratory flow increased [17 (3) vs 48 (8) litre min(-1); P < 0.0001), and dynamic compliance improved [+15 (8)%]. No difference was noted for static airway pressure, static compliance, and arterial oxygenation. No significant change could be demonstrated in the systolic [left ventricular end-systolic wall stress 66 (16) vs 63 (14) x 10(3) dyn cm(-2) m(-2)] or diastolic function [early diastolic velocity 10.3 (2.5) vs 10.5 (2.7) cm s(-1)]. CONCLUSIONS: In this study, no short-term beneficial effect of PC ventilation could be demonstrated over conventional VC ventilation in patients with pneumoperitoneum.
BJA

hal-00689758
https://hal.archives-ouvertes.fr/hal-00689758
DOI : 10.1093/bja/aem166
PUBMED : 17626027

Éditeur(s) : HAL CCSD IWA Publishing
Résumé : International audience
UV spectrophotometry is largely used for water and wastewater quality monitoring. The measurement/estimation of specific and aggregate parameters such as nitrate and dissolved organic carbon (DOC) is possible with UV spectra exploitation, from 2 to multi wavelengths calibration. However, if nitrate determination from UV absorbance is known, major optical interferences linked to the presence of suspended solids, colloids or dissolved organic matter limit the relevance of UV measurement for DOC assessment. A new method based on UV spectrophotometric measurement of raw samples (without filtration) coupling a dual pathlength for spectra acquisition and the second derivative exploitation of the signal is proposed in this work. The determination of nitrate concentration is carried out from the second derivative of the absorbance at 226 nm corresponding at the inflexion point of nitrate signal decrease. A short optical pathlength can be used considering the strong absorption of nitrate ion around 210 nm. For DOC concentration determination the second derivative absorbance at 295 nm is proposed after nitrate correction. Organic matter absorbing slightly in the 270-330 nm window, a long optical pathlength must be selected in order to increase the sensitivity. The method was tested on several hundred of samples from small rivers of two agricultural watersheds located in Brittany, France, taken during dry and wet periods. The comparison between the proposed method and the standardised procedures for nitrate and DOC measurement gave a good adjustment for both parameters for ranges of 2-100 mg/L NO3 and 1 30 mg/L DOC. (C) 2016 Elsevier Ltd. All rights reserved.
ISSN: 0043-1354

hal-01460742
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01460742
DOI : 10.1016/j.watres.2016.11.010
PUBMED : 27838025

Éditeur(s) : HAL CCSD Nature Publishing Group
Résumé :  
In this paper, we report a study of the mating system and gene flow of Symphonia globulifera, a hermaphroditic, mainly bird-pollinated tree species with a large geographic distribution in the tropical Americas and Africa.Using three microsatellites, we analysed 534 seeds of 28 open pollinated families and 164 adults at the experimental site 'Paracou' in French Guiana. We observed, compared to other tropical tree species, relatively high values for the effective number of alleles. Significant spatial genetic structure was detected, with trees at distances up to 150 m more genetically similar than expected at random. We estimated parameters of the mating system and gene flow by using the mixed mating model and the TwoGener approach. The estimated multilocus outcrossing rate, tm, was 0.920. A significant level of biparental inbreeding and a high proportion of full-sibs were estimated for the 28 seed arrays. We estimated mean pollen dispersal distances between 27 and 53 m according to the dispersal models used. Although the adult population density of S. globulifera in Paracou was relatively high, the joint estimation of pollen dispersal and density of reproductive trees gave effective density estimates of 1.6 and 1.3trees/ha. The parameters of the mating system and gene flow are discussed in the context of spatial genetic and demographic structures, flowering phenology and pollinator composition and behaviour.
ISSN: 0018-067X

hal-01032178
https://hal.archives-ouvertes.fr/hal-01032178
DOI : 10.1038/sj.hdy.6800560

Éditeur(s) : HAL CCSD
Résumé : International audience
The published literature related to distributed parameter systems theory is quite large, and it is not feasible in a single book to give a detailed review on the wide historical development of all of it. Our choice of what to cover was motivated by the following consideration. Since distributed parameter systems evolve in time and space, the research investigations on their analysis and control focus on considering the whole system domain for any study. We feel strongly that within this research field, animportant consideration was missing; that of considering that the system may give raise to prescribed subdomains (regions) where one has to achieve an objective. This is the case of so many applications ranging from engineering to life sciences. For that reason, covering classical prerequisite in analysis and control areas, we have devoted the book to the extension of the classical distributed parameter results to regional ones.Students of mathematics do not come into contacts with distributed parameter systems during their classes. They are introduced to them when they start research and often they are influenced by the knowledge and the advice of experimented scientists. This was our case at the very beginning of these research investigations in the mid 70’s. We would liketo express our special thanks to many of them and mainly late Professor Anthony J. Pritchard (University of Warwick, GB) and late Professor J.L. Lions (College de France) who were so encouraging in front of our determination in driving an academic carrier. We also express our thanks to our co-workers and research students. We wish to acknowledge the feedback from all those who took courses based on various parts of this book.This book may be used by graduate students in mathematics, engineering, physics, and even by students from other fields such as life or environmental sciences. This book may also be used as an information source for researchers and education professionals. We assume that the readers already know the basic concepts of analysis and control of distributedparameter systems.
https://hal.archives-ouvertes.fr/hal-01297188

ISBN : 978-2-35412-140-2
hal-01297188
https://hal.archives-ouvertes.fr/hal-01297188

Éditeur(s) : HAL CCSD
Résumé : International audience
STUDY QUESTION: Do freezing and in vitro culture procedures enhance the expression of proteins involved in apoptotic or autophagic pathways in murine pre-pubertal testicular tissue? SUMMARY ANSWER: IVM strongly modified apoptosis- and autophagy-related relative protein levels in mice testicular tissue whereas the impact of cryopreservation procedures was minimal at the end of the culture. WHAT IS KNOWN ALREADY: In vitro spermatogenesis remains a challenging technical issue as it imposes to find a very close balance between survival and death of germ cell natural precursors (i.e. gonocytes and spermatogonia), which will eventually undergo a complete spermatogenesis close to in vivo conditions. The establishment of efficient culture conditions coupled with suitable cryopreservation procedures (e.g. controlled slow freezing [CSF] and solid surface vitrification [SSV]) of pre-pubertal testicular tissue is a crucial step in the fields of fertility preservation and restoration to improve the spermatic yield obtained in vitro. STUDY DESIGN, SIZE, DURATION: Here, we study cryopreservation procedures (i.e. CSF or SSV) and the impact of culture media compositions. A first set of 66 mouse pre-pubertal testes were directly cultured during 30, 36, 38 and 60 days (D) from 2.5 to 6.5-day-old CD-1 mice to evaluate the impact of time-aspect of culture and to endorse the reverse phase protein microarrays (RPPM) technique as an adapted experimental tool for the field of in vitro spermatogenesis. Ninety others fresh, slow-frozen and vitrified pre-pubertal testes were cultured during 30 days for the principal study to evaluate the impact of cryopreservation procedures before and after culture. Thirty-four testes dissected from 2.5, 6.5, 36.5, 40.5, 42.5 and 62.5 days postpartum (dpp) mice, corresponding to the time frames of spermatogenesis orchestrated in vitro, were used as in vivo controls. PARTICIPANTS/MATERIALS, SETTING, METHODS: After in vitro culture, testicular tissue samples originated from 2.5 or 6.5-day-old CD-1 male mice were analyzed using RPPM. This targeted proteomic technique allowed us to assess the expression level of 29 apoptosis- and autophagy-related factors by normalizing blank-corrected signal values. In addition, morphological analyses (e.g. HES, PAS, TRA98 and CREM) and DNA fragmentation in intra-tubular cells (i.e. terminal deoxynucleotidyl transferase dUTP nick end labeling; TUNEL) were assessed for the distinct experimental conditions tested as well as for in vivo control mouse testes. MAIN RESULTS AND THE ROLE OF CHANCE: A validation of the RPPM procedure in the field of in vitro spermatogenesis was completed with assay and array robustness before a principal study concerning the evaluation of the impact of in vitro culture and cryopreservation procedures. The proportion of elongated spermatids and the total cell number per seminiferous tubule tended to be very different between the in vivo and in vitro conditions (P < 0.05), suggesting the presence of a beneficial regulation on the first spermatogenesis wave by intrinsic apoptosis (Caspase₉) and autophagy (Atg5) factors (P < 0.0003 and r2 = 0.74). Concerning the impact of culture media compositions, a basic medium (BM) composed of αMEM plus 10% KnockOut™ serum replacement and gentamicin supplemented with retinol (Rol) and vitamin E (Vit. E) was selected as the best culture medium for fresh 6.5 dpp tissue cultured during 30D with 27.7 ± 8.10% of seminiferous tubules containing elongated spermatids. Concerning the impact of cryopreservation procedures, SSV did not have any impact on the morphological parameters evaluated after culture in comparison to fresh tissue (FT) controls. The proportion of tubules with elongated spermatids on testicular explants cultured with BMRol+Vit. E was not different between SSV (6.6 ± 1.6%) and CSF (5.3 ± 1.9%); however, round spermatids were observed more frequently for SSV (19 ± 6.2%) than CSF (3.3 ± 1.9%, P = 0.0317). Even if the proportion of TUNEL-positive cells for BMRol+Vit. E was higher at D30 after SSV (4.12 ± 0.26%) than CSF (1.86 ± 0.12%, P = 0.0022) and FT (2.69 ± 0.33%, P = 0.0108), the DNA damages observed at the end of the culture (i.e. D30) were similar to respective 6.5 dpp controls. In addition, the relative protein level expression ratio of an apoptotic factor, the phosphorylated FADD on Fas, was reduced by 64-fold in vitrified testes cultured with BMRol+Vit. E. Furthermore, we found in this study that the StemPro®-34 SFM culture medium supplemented with growth factors (e.g. EGF, bFGF, GDNF and LIF) prevented the differentiation of spermatogonial stem cells in favor of a significant proliferation with a better architectural pattern than in vivo 6.5 dpp controls with an increase of seminiferous tubules area for FT (P = 0.0357) and CSF (P = 0.0317). LIMITATIONS REASONS FOR CAUTION: Despite our promising results, the evaluation of apoptotic- and autophagic-related proteins was studied for a limited amount of proteins and on global testicular tissue. WIDER IMPLICATIONS OF THE FINDINGS: The data presented herein will help to improve apoptotic and autophagic understanding during the first spermatogenic wave. Moreover, our findings illustrate for the first time that, using finely-tuned experimental conditions, a testicular in vitro culture combined with proteomic technologies may significantly facilitate the study of cryopreservation procedures and in vitro culture evaluations. This study may also contribute to improve work on testicular tissues from pre-pubertal and adolescent cancer survivors. STUDY FUNDING/COMPETING INTEREST(S): This study was supported by a Ph.D. grant from the Rouen Normandie Université and a financial support from 'la Ligue nationale contre le cancer' (both awarded to L.D.), funding from Institute for Research and Innovation in Biomedicine (IRIB), Agence de la Biomédecine, and co-supported by European Union and Région Normandie. Europe gets involved in Normandie with European Regional Development Fund (ERDF). The authors declare that there is no conflict of interest.
Molecular Human Reproduction

hal-01647081
https://hal-univ-rennes1.archives-ouvertes.fr/hal-01647081
DOI : 10.1093/molehr/gax054
PUBMED : 29040674

Éditeur(s) : Université des Antilles Études caribéennes
Résumé : La région durable doit se positionner dans un contexte d'ouverture et de concurrence territoriale. À défaut de pouvoir influencer notablement les paramètres du changement global, les acteurs sont appelés à les anticiper et à les prendre en compte dans leurs stratégies. Ils sont invités à élaborer une vision prospective qui renouvelle leurs rapports au territoire dans la perspective du développement durable. C’est dans cet esprit que l’exercice de prospective a été développé. La méthode, présentée ici pour la région Guadeloupe, intègre à la fois les tendances lourdes liées à l’environnement contextuel et les tendances lourdes spécifiques au territoire. Au-delà d’un scénario au fil de l’eau qui peut conduire à une marginalisation de la région, deux visions du devenir guadeloupéen sont analysées vers une inacceptable et une souhaitable.
Sustainable Region should position itself in a context of openness and territorial competition. Without the ability to significantly influence the parameters of global change, the actors are called upon to anticipate and take them into account in their strategies. They are encouraged to develop a future vision that renews their relationship to the territory in the context of sustainable development. It is in this spirit that Territorial Prospective exercise was developed. The method presented here for the Guadeloupe region, integrates both trends related to the contextual environment and trends specific to the territory. Beyond a scenario over water which can lead to a marginalization of the region, two visions of the future are analyzed Guadeloupe ... towards one unacceptable and one desirable.
Guadeloupe

Droits : info:eu-repo/semantics/openAccess
urn:doi:10.4000/etudescaribeennes.10998
http://journals.openedition.org/etudescaribeennes/10998

Résumé : Cette thèse concerne la modélisation des dynamiques de maladies foliaires de cultures pérennes tropicales à différentes échelles spatiales. Cette approche de modélisation est appliquée à la cercosporiose noire du bananier. Il s’agit d’explorer et de déterminer les paramètres environnementaux et de résistance de l’hôte ayant une influence significative sur la dynamique spatiotemporelle de la maladie et d’apporter des éléments associés au contrôle de la cercosporiose noire.Deux modèles ont été développés dans le cadre de cette thèse. La dynamique épidémiologique au niveau de la plante est décrite par un modèle mécaniste décomposé en un modèle de croissance de la plante et un module épidémiologique décrivant le cycle épidémique du pathogène. L’architecture du bananier est prise en compte par le biais de compartiments foliaires positionnés dans l’espace. Le modèle a été validé par un jeu de données indépendant. Les expérimentations numériques et l’analyse de sensibilité du modèle réalisées par les méthodes de Morris et de e-FAST ont permis de mieux comprendre le fonctionnement épidémique de cette maladie et d’identifier les paramètres influant le plus la dynamique épidémique en particulier la vitesse d’extension des lésions, la durée d’incubation et l’efficacité d’infection .L’approche bayésienne a permis de prendre en compte l’information a priori disponible pour ces trois paramètres sur lesquels a porté l’inférence statistique. L’analyse de sensibilité du modèle a également permis d’identifier l’influence de deux paramètres liés à la croissance de la plante : le nombre de feuilles sur une plante et le rythme d’émission foliaire Un modèle de dynamique spatio-temporelle de la cercosporiose noire a été développé à l’échelle d’un territoire à partir d’enquêtes effectuées enMartinique pendant la période d’invasion de cette maladie de septembre 2010 à mai 2012. Les données récoltées étant censurées, l’inférence des paramètres du modèle a été réalisée dans un cadre bayésien en utilisant un algorithme d’augmentation de données. Le modèle et l’inférence développés permettent de reconstruire la dynamique spatio-temporelle de l’invasion et de prédire la fin d’invasion sur le territoire.Les deux modèles de dynamiques spatio-temporelles développés à deux échelles spatiales différentes ont permis d’acquérir des informations importantes pour construire des outils de conception de méthode de contrôle de la cercosporiose noire des bananiers.
This thesis concerns the modeling of the dynamics of foliar diseases of tropical tree crops at different spatial scales. This modeling approach is applied to black Sigatoka of banana. It is to explore and determine the environmental parameters and host resistance has a significant influence on the spatiotemporal dynamics of the disease and to provide elements associated with the control of Sigatoka noire.Deux models were developed as part of this thesis. The epidemiological dynamics at the plant is described by a mechanistic model decomposed into a growth model of the plant and an epidemiological unit describing the pathogen epidemic cycle. The architecture of the banana is taken into account through foliar compartments positioned in space. The model was validated by an independent data set. Numerical experiments and model sensitivity analysis performed by the methods of Morris and e-FAST enabled to better understand the functioning of this epidemic disease and identify the parameters affecting the most dynamic epidemic especially speed extension of the lesions, the incubation period and efficiency of Bayesian .L'approche infection allowed to take into account prior information available for these three parameters that were the statistical inference. The model sensitivity analysis also identified the influence of two parameters related to plant growth: the number of leaves on a plant and rate of leaf emission A dynamic model of space-time Black Sigatoka has been developed at the scale of a territory from surveys enMartinique during the period of invasion of the disease from September 2010 to May 2012. The data collected being censored, inference of model parameters has was performed in a Bayesian framework, using a data augmentation algorithm. The model developed and inference possible to reconstruct the spatiotemporal dynamics of the invasion and predict the end of the invasion territoire.Les two spatio-temporal dynamics models developed at two different spatial scales has been gained important information for build tools design method of control of black Sigatoka of banana.

http://www.theses.fr/2015AGUY0835/document

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
Sedimentary rocks and detrital minerals sample large areas of the continental crust, and they are increasingly seen as a reliable archive for its global evolution. This study presents two approaches to model the growth of the continental crust through the sedimentary archive. The first builds on the variations in U-Pb, Hf and O isotopes in global databases of detrital zircons. We show that uncertainty in the Hf isotope composition of the mantle reservoir from which new crust separated, in the 176Lu/177Hf ratio of that new crust, and in the contribution in the databases of zircons that experienced ancient Pb loss(es), adds some uncertainty to the individual Hf model ages, but not to the overall shape of the calculated continental growth curves. The second approach is based on the variation of Nd isotopes in 645 worldwide fine-grained continental sedimentary rocks with different deposition ages, which requires a correction of the bias induced by preferential erosion of younger rocks through an erosion parameter referred to as K. This dimensionless parameter relates the proportions of younger to older source rocks in the sediment, to the proportions of younger to older source rocks present in the crust from which the sediment was derived. We suggest that a Hadean/Archaean value of K = 1 (i.e., no preferential erosion), and that post-Archaean values of K = 4–6, may be reasonable for the global Earth system. Models built on the detrital zircon and the fine-grained sediment records independently suggest that at least 65% of the present volume of continental crust was established by 3 Ga. The continental crust has been generated continuously, but with a marked decrease in the growth rate at ~ 3 Ga. The period from > 4 Ga to ~ 3 Ga is characterised by relatively high net rates of continental growth (2.9–3.4 km3 yr− 1 on average), which are similar to the rates at which new crust is generated (and destroyed) at the present time. Net growth rates are much lower since 3 Ga (0.6–0.9 km3 yr− 1 on average), which can be attributed to higher rates of destruction of continental crust. The change in slope in the continental growth curve at ~ 3 Ga is taken to indicate a global change in the way bulk crust was generated and preserved, and this change has been linked to the onset of subduction-driven plate tectonics. At least 100% of the present volume of the continental crust has been destroyed and recycled back into the mantle since ~ 3 Ga, and this time marks a transition in the average composition of new continental crust. Continental crust generated before 3 Ga was on average mafic, dense, relatively thin (< 20 km) and therefore different from the calc-alkaline andesitic crust that dominates the continental record today. Continental crust that formed after 3 Ga gradually became more intermediate in composition, buoyant and thicker. The increase in crustal thickness is accompanied by increasing rates of crustal reworking and increasing input of sediment to the ocean. These changes may have been accommodated by a change in lithospheric strength at around 3 Ga, as it became strong enough to support high-relief crust. This time period therefore indicates when significant volumes of continental crust started to become emergent and were available for erosion and weathering, thus impacting on the composition of the atmosphere and the oceans.
ISSN: 0037-0738

hal-01622696
https://hal.archives-ouvertes.fr/hal-01622696
DOI : 10.1016/j.sedgeo.2017.06.001

Éditeur(s) : HAL CCSD Elsevier
Résumé : International audience
A set of four reactive flow-through experiments at temperature T = 100 degrees C and total pressure P=12 MPa was performed in limestone reservoir samples. By using various ranging from 0.7 to 10 MPa, these experiments mimic mass transfers occurring (1) near the injection well, where the brine is almost saturated with CO2 (i.e. P-CO2 approximate to P), and (2) at increasing distances from the injection well, where the fluid displays lower values and higher divalent cation concentrations due rock dissolution along the fluid pathway. Results for P-CO2 = 10 MPa show non-uniform dissolution features associated with transport-controlled mass transfer, while reaction-controlled uniform dissolution is observed for P-CO2 = 2.5 MPa. The experiment with P-CO2 = 6 MPa allows investigating in detail the transition from transport-to reaction-controlled dissolution. Conversely, the experiment reproducing conditions far from the injection well (P-CO2 = 0.7 MPa), shows a decrease of porosity triggered by the precipitation of Mg-rich calcite. For all the dissolution experiments, the time-resolved porosity phi(t) can be modeled by a simple non-linear equation including parameters that characterise the dissolution regime triggered by the reactivity of the inlet fluid (measured by the Damkohler number, Da). Furthermore, all dissolution experiments display power scaling between permeability (k) and porosity (phi) with distinctly different scaling exponents characterising the reactivity of the fluid percolating the sample, independently from the decrease with time of the reactive surface area. It is shown also that dissolution at moderate positive values of Da seems the most efficient to increase permeability and promote a rapid spreading of the reaction front, while inducing minimal modification of the porosity in the vicinity of the CO2 injection well. These results can be used to parameterize the k-phi function for modeling the earliest dissolution processes occurring in the vicinity of the reaction front.
ISSN: 0009-2541

hal-00445277
https://hal.archives-ouvertes.fr/hal-00445277
DOI : 10.1016/j.chemgeo.2009.03.028

Éditeur(s) : Elsevier
Résumé : The rapid development of the albacore tuna (Thunnus alalunga) driftnet fishery in the Pay of Biscay (Atlantic ocean, France) has incited European management authorities to ask for a study of its ecological impact on populations of common dolphins and striped dolphins. A programme with onboard observers has been led during 1992 and 1993, and a sighting survey has allowed the evaluation of the abundances of fractions of populations in the studied area. For the population of common dolphins, the biological parameter estimation has allowed the building of a discrete age-structured model based on a Leslie matrix. Sensitivity studies have been conducted using four model parameters (age of first reproduction, interval between births, juvenile and adult survival rates). Results show that the increase rate of the population presents the highest sensitivity versus adult survival rate and, in second place versus the interval between births.
Le développement rapide de la pêche au thon germon (Thunnus alalunga) au filet maillant dérivant dans le golfe de Gascogne a incité les instances de gestion européenne à demander une étude de son impact écologique sur les populations de dauphin commun et de dauphin bleu et blanc. Des observateurs embarqués à bord ont mené au cours des années 1992 et 1993 une campagne d'échantillonnage sur un parcours linéaire, ce qui a permis d'estimer l'abondance des fractions de populations présentes sur la zone étudiée. Pour la population de dauphins communs, l'estimation des paramètres biologiques a permis de construire un modèle à pas discret structuré en âge faisant appel à une matrice de Leslie. Des études de sensibilité ont été réalisées selon quatre paramètres du modèle; âge de première mise bas, intervalle entre mises bas, taux de survie des juvéniles, taux de survie des adultes sur les deux sexes confondus. Les résultats montrent que le taux d'accroissement de la population présente la plus forte sensibilité, en fonction du taux de survie des adultes avec, en deuxième ordre, l'intervalle entre mises bas.
Aquatic Living Resources (0990-7440) (Elsevier), 1998-11 , Vol. 11 , N. 6 , P. 359-369

Droits : 1998 Published by Elsevier SAS
http://archimer.ifremer.fr/doc/1998/publication-865.pdf
DOI:10.1016/S0990-7440(99)80001-1
http://archimer.ifremer.fr/doc/00000/865/

Éditeur(s) : Workshop held in Travinh (Vietnam), 5-8 March 2002
Résumé : The economie performance of shrimp rearing is govemed by three types of factors a) the environmental conditions prevailing around the farms, b) farmers' zootechnical practise and know how, c) economie management. The Gambas project aims at identifying the relative role played by these parameters in the success or failure of small-scale shrimp farming enterprises of the Mekong delta in Vietnam. It is being conducted by French and Vietnamese partners under the co-leadership of Ifremer and the Nha Trang Institute of Oceanography.

Droits : info:eu-repo/semantics/openAccess
http://archimer.ifremer.fr/doc/00083/19387/16981.pdf
http://archimer.ifremer.fr/doc/00083/19387/